View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18714_low_4 (Length: 424)

Name: NF18714_low_4
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18714_low_4
NF18714_low_4
[»] chr5 (1 HSPs)
chr5 (75-406)||(7427072-7427399)
[»] chr2 (2 HSPs)
chr2 (24-258)||(7983113-7983343)
chr2 (322-406)||(7982991-7983075)
[»] chr8 (4 HSPs)
chr8 (24-258)||(41522131-41522361)
chr8 (322-406)||(41522009-41522093)
chr8 (258-346)||(16363185-16363273)
chr8 (309-346)||(40250346-40250383)
[»] chr7 (5 HSPs)
chr7 (24-184)||(4167953-4168115)
chr7 (322-406)||(4168190-4168274)
chr7 (31-100)||(38406467-38406536)
chr7 (249-285)||(4168160-4168196)
chr7 (223-258)||(4168119-4168154)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 75 - 406
Target Start/End: Original strand, 7427072 - 7427399
Alignment:
Q  75 caaaacacaaacttaaaccatgtataaagaaaagaaaagaa---ccacttaagccaaaaacccctatctctcgccttccttctctttttgcttcgtttct 171  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7427072 caaaacacaaacttaaaccatgtataaagaaaagaaaagaaaaaccacttaagccaaaa-cccctatctctcgccttccttctctttttgcttcgtttct 7427170  T
Q  172 tcctttggagtctaaatctgaatccgaatctgaggtgttgttgtgaatgaatctgagtatgaacaggatctattagggggtcaaacagagaaaaaacatt 271  Q
    ||||||| ||||| |||||||||      |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7427171 tcctttgaagtctgaatctgaat------ctgaggtgttattgtgaatgaatctgagtatgaacaggatctattagggggtcaaacagagaaaaaacatt 7427264  T
Q  272 aaaatggtgattatttttgctggtttgttgtttttcctgggttagtatgatgattatgttgaaggatatgaaggagagatgcattttcctttggggtatt 371  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7427265 aaaatggtgattatttttgctgggttgttgtttttcctgggttagtatgatgattatgttgaaggatatgaaggagagatgcattttcctttggggtatt 7427364  T
Q  372 ggcgtattgcttctggaattgtcaacgggaaggaa 406  Q
    |||||||||||| ||||||||| ||||||||||||    
T  7427365 ggcgtattgcttatggaattgttaacgggaaggaa 7427399  T

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Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 24 - 258
Target Start/End: Complemental strand, 7983343 - 7983113
Alignment:
Q  24 gtcatctaatttcatccatgaatattgtcctccttcatcatttttaataatcaaaacacaaacttaaaccatgtataaagaaaagaaaag---aaccact 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| |    
T  7983343 gtcatctaatttcatccatgaatattgtcctccttcatcatttttaataatcaaaacacaaacttaaaccatgtataaagaaaagaaaagaaaaaccatt 7983244  T
Q  121 taagccaaaaacccctatctctcgccttccttctctttttgcttcgtttcttcctttggagtctaaatctgaatccgaatctgaggtgttgttgtgaatg 220  Q
     ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| |||| |||||||||||||||||||    
T  7983243 gaagcc-aaaatccctatctctcgccttccttctctttttgcttcgtttcttcctttggag------tctgaatctgaatttgaggtgttgttgtgaatg 7983151  T
Q  221 aatctgagtatgaacaggatctattagggggtcaaaca 258  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  7983150 aatctgagtatgaacatgatctattagagggtcaaaca 7983113  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 322 - 406
Target Start/End: Complemental strand, 7983075 - 7982991
Alignment:
Q  322 tgattatgttgaaggatatgaaggagagatgcattttcctttggggtattggcgtattgcttctggaattgtcaacgggaaggaa 406  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  7983075 tgattatgttgaaggatatgaaggagagatgtattttcctttggggtattggcgttttgcttctggaattgttaacgggaaggaa 7982991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 24 - 258
Target Start/End: Complemental strand, 41522361 - 41522131
Alignment:
Q  24 gtcatctaatttcatccatgaatattgtcctccttcatcatttttaataatcaaaacacaaacttaaaccatgtataaagaaaagaaaag---aaccact 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||     
T  41522361 gtcatctaatttcatccatgaatattgtcatccttcatcatttttaataatcaaaacacaaacttaaaccatgtataaagaaaagaaaagaaaaaccacc 41522262  T
Q  121 taagccaaaaacccctatctctcgccttccttctctttttgcttcgtttcttcctttggagtctaaatctgaatccgaatctgaggtgttgttgtgaatg 220  Q
      |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| |||| |||||||||||||||||||    
T  41522261 gtagcc-aaaacccctatctctcgccttccttctctttttgcttcgtttcttcctttggag------tctgaatctgaatttgaggtgttgttgtgaatg 41522169  T
Q  221 aatctgagtatgaacaggatctattagggggtcaaaca 258  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  41522168 aatctgagtatgaacatgatctattagagggtcaaaca 41522131  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 322 - 406
Target Start/End: Complemental strand, 41522093 - 41522009
Alignment:
Q  322 tgattatgttgaaggatatgaaggagagatgcattttcctttggggtattggcgtattgcttctggaattgtcaacgggaaggaa 406  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41522093 tgattatgttgaaggatatgaaggagagatgtattttcctttggggtattggcgtattgcttctggaattgttaacgggaaggaa 41522009  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 16363185 - 16363273
Alignment:
Q  258 agagaaaaaacattaaaatggtgattatttttgctggtttgttgtttttcctgggttagtatgatgattatgttgaaggatatgaagga 346  Q
    |||||||||||||||||||||||||||||||| ||   |||||||||||  |||||| ||||||||||||||||||||  |||||||||    
T  16363185 agagaaaaaacattaaaatggtgattattttttctaagttgttgttttttatgggttggtatgatgattatgttgaagattatgaagga 16363273  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 40250383 - 40250346
Alignment:
Q  309 tgggttagtatgatgattatgttgaaggatatgaagga 346  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  40250383 tgggttggtatgatgattatgttgaaggataggaagga 40250346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 4167953 - 4168115
Alignment:
Q  24 gtcatctaatttcatccatgaatattgtcctccttcatcatttttaataatcaaaacacaaacttaaaccatgtataaagaaaagaaaag---aaccact 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  4167953 gtcatctaatttcatccatgaatattgtcctccttcatcatttttaataatcaaaacacaaacttaaaccatgtataaagaaaagaaaagaaaaaccact 4168052  T
Q  121 taagccaaaaacccctatctctcgccttccttctctttttgcttcgtttcttcctttggagtct 184  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4168053 gaagcc-aaaacccctatctctcgccttccttctctttttgcttcgtttcttcctttggagtct 4168115  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 322 - 406
Target Start/End: Original strand, 4168190 - 4168274
Alignment:
Q  322 tgattatgttgaaggatatgaaggagagatgcattttcctttggggtattggcgtattgcttctggaattgtcaacgggaaggaa 406  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||    
T  4168190 tgattatgttgaaggatatgaaggagggatgcattttcctttggggtattggcgtattgcttatcgaattgttaacgggaaggaa 4168274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 38406467 - 38406536
Alignment:
Q  31 aatttcatccatgaatattgtcctccttcatcatttttaataatcaaaacacaaacttaaaccatgtata 100  Q
    ||||||||||||||||||||| ||||||||||  ||||||| |||||||||||||| |||||||| ||||    
T  38406467 aatttcatccatgaatattgttctccttcatccattttaatgatcaaaacacaaacataaaccatatata 38406536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 4168160 - 4168196
Alignment:
Q  249 gggtcaaacagagaaaaaacattaaaatggtgattat 285  Q
    |||||||||||||||||||||||||||||||||||||    
T  4168160 gggtcaaacagagaaaaaacattaaaatggtgattat 4168196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 4168119 - 4168154
Alignment:
Q  223 tctgagtatgaacaggatctattagggggtcaaaca 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  4168119 tctgagtatgaacaggatctattagggggtcaaaca 4168154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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