View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_6 (Length: 399)
Name: NF18714_low_6
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 34834377 - 34834229
Alignment:
| Q |
10 |
aataatatgtgatagttataccgtcccactcaatttcactttattctgctcaatttatttcatttttaaatatccaactaaacaaatcctaaatttaact |
109 |
Q |
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| T |
34834377 |
aataaaatgtgatagttataccgtcccactcaatttcattttattctgctcaatttatttcatttttaaatatccaactaaacaaatcctaaatttaatt |
34834278 |
T |
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| Q |
110 |
ctttcnnnnnnngaaatcctaaatttaattgagtcttatgataatgatt |
158 |
Q |
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| T |
34834277 |
ctttcaaaaaaagaaatcctaaatttaattgagtcttatgataatgatt |
34834229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 285 - 384
Target Start/End: Complemental strand, 34834197 - 34834096
Alignment:
| Q |
285 |
agaggagacaagaaatagaaaattaagaagtgccggaaagaaatcaagatacac--catttggcaaaccataaattaatttgaccaagggatatgaaaat |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34834197 |
agaggagacaagaaatagaaaattaagaagtgccggaaagaaagcaagatacacaccatttggcaaaccataaattaatttgaccaagggatatgaaaat |
34834098 |
T |
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| Q |
383 |
ta |
384 |
Q |
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|| |
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| T |
34834097 |
ta |
34834096 |
T |
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