View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_7 (Length: 395)
Name: NF18714_low_7
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 6621119 - 6621337
Alignment:
| Q |
16 |
ataatgggggagaagatcaacacacattgtccaaagtttcttcttgtatagacaaaacaacagaaatgatcttctcaaacaactcaaaaatatcaataag |
115 |
Q |
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| T |
6621119 |
ataatgggggagaagatcaacacacattgtccaaagtgtcttcttgtatagacaaaacaacagaaatgatcttcgcaaacaactcaacaataacaataag |
6621218 |
T |
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| Q |
116 |
cctaacttcattaatggaggcttttctttaaagtaagtaatgacattgtgaaaactggttgttgtaatctacctctgaaatcctttaaacatattagtac |
215 |
Q |
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| T |
6621219 |
cctaacttcattaatggaggctttacttaaaagtaagtaatgacattgtgaaaactggttgttgtaatctacctatgaaatcctttaaacatattagtac |
6621318 |
T |
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| Q |
216 |
tacattctgtaaattggca |
234 |
Q |
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| T |
6621319 |
tacattctgtaaattggca |
6621337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 375
Target Start/End: Original strand, 6621383 - 6621482
Alignment:
| Q |
276 |
tatgtccatgatatgtaccattcttgttagcgnnnnnnncctgataaattgcctgttttattgaaatctttacatgttatgaaaaatactattatgcttt |
375 |
Q |
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| T |
6621383 |
tatgtccatgatatgtaccattcttgttagcgtttttttacggataatttgccagttttattgaaatctttacatgttatgaaaaatactattatgcttt |
6621482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 14819603 - 14819521
Alignment:
| Q |
271 |
atgaatatgtccatgatatgtaccattcttgttagcgnnnnnnncctgataaattgcctgttttattgaaatctttacatgtta |
354 |
Q |
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| T |
14819603 |
atgaatatgtccatgatttgtaccattctatttagcgtttttt-cctgataaattggcggttttattgaaatctttacatgtta |
14819521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 6617276 - 6617223
Alignment:
| Q |
24 |
ggagaagatcaacacacattgtccaaagtttcttcttgtatagacaaaacaaca |
77 |
Q |
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| T |
6617276 |
ggagaagatcaacagaccttattcaaagtatcttcttttatagacaaaacaaca |
6617223 |
T |
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