View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_8 (Length: 389)
Name: NF18714_low_8
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 10426327 - 10425943
Alignment:
| Q |
8 |
cagcacagagagatttgagaaaggcatcaacaggtaaactattcaagcaacnnnnnnnnnn--ttaataatatatcaaatatta---attgggaaatttt |
102 |
Q |
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| T |
10426327 |
cagcacatagagacttgagaaaggcatcaacaggtaaactattcaagcaaaaaataaaaacatttaataacatataaaatattattaattggggaatttt |
10426228 |
T |
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| Q |
103 |
aaatttaagagacaatttcttatgttacattggaatttctatgttcttaccctttaggattaaattctgctagtccaaatagtgtagtgatctgtttggc |
202 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10426227 |
aaatttaagagacaattttttatgttacattggaacttctatgttcttaccctttaggattaaattctgctagtccaaatagtgtagtgatctgtttggc |
10426128 |
T |
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| Q |
203 |
aaaggaaaaaagttacataaatcagcaaagtc---cta-----gtgtttttgagtgtctgacacatattggtgtccgagtgaaacaatgtcggtgtttca |
294 |
Q |
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|||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10426127 |
aaaggaaaaaagttacataaatcagcaaagtctatgtatcaaggtgtgtttgagtgtctgacacatattagtgtccgagtgaaacaatgtcggtgtttca |
10426028 |
T |
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| Q |
295 |
cttggtgtattatagatgaa-----taaattaaattaaagagtaatgaagtagtatttttatgtacctcaccaataaaggatttg |
374 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10426027 |
cttggtgtactatagatgaataaattaaattaaattaaagagtaataaagtagtatttttatgtacctcaccaataaaggatttg |
10425943 |
T |
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