View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18714_low_9 (Length: 379)

Name: NF18714_low_9
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18714_low_9
NF18714_low_9
[»] chr4 (1 HSPs)
chr4 (7-363)||(23947985-23948341)
[»] chr1 (9 HSPs)
chr1 (7-309)||(16098817-16099118)
chr1 (221-361)||(33856186-33856316)
chr1 (221-361)||(33924607-33924737)
chr1 (86-154)||(33855785-33855857)
chr1 (86-154)||(33925066-33925138)
chr1 (312-363)||(16104906-16104957)
chr1 (44-74)||(33855726-33855756)
chr1 (44-74)||(33925166-33925196)
chr1 (113-143)||(41934231-41934261)
[»] chr5 (2 HSPs)
chr5 (86-134)||(31572998-31573046)
chr5 (94-154)||(39540594-39540654)
[»] chr8 (1 HSPs)
chr8 (109-152)||(21463242-21463285)
[»] chr2 (1 HSPs)
chr2 (98-139)||(24888075-24888116)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 23948341 - 23947985
Alignment:
Q  7 aaaataattgggctaaatatacaagtattgggtcttgttacataaaatcaatttggattgaattcattnnnnnnntacaactttattatatggatcggat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||    
T  23948341 aaaataattgggctaaatatacaagtattgggtcttgttacataaaatcaatttggattgaattcattaaaaaaatacaactttactatatggatcggat 23948242  T
Q  107 gaacatccatccattaataatctaataatggatagatcagatgaatttaaacttcatggatgaattttttagaaaattgtttagtgaatttttaatgaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23948241 gaacatccatccattaataatctaataatggatagatcagatgaatttatacttaatggatgaattttttagaaaattgtttagtgaatttttaatgaac 23948142  T
Q  207 tagtggattttaacgaaaggctttaggttaggcctacaaatttatcataggctagacgcagacctttcaaagcatactctggtctggcctgacctattca 306  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  23948141 tggtggattttaactaaaggctttaggttaggcctacaaatttatcataggctaggcgcagacctttcaatacatactctggtctggcctgacctattca 23948042  T
Q  307 cacctttattttagaggtttcttccggtgcacttgcttttgagataagatttgttct 363  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  23948041 cacccttattttagaggtttcttccggtgcacttggttttaagataagatttgttct 23947985  T

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Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 16098817 - 16099118
Alignment:
Q  7 aaaataattgggctaaatatacaagtattgggtcttgttacataaaatcaatttggattgaattcattnnnnnnntacaactttattatatggatcggat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||        |||||||||| ||||||||||||||    
T  16098817 aaaataattgggctaaatatacaagtattgggtcttgttacataaaattaatttggattgaagtcataaaaaaaatacaactttactatatggatcggat 16098916  T
Q  107 gaacatccatccattaataatctaataatggatagatcagatgaatttaaacttcatggatgaattttttagaaaattgtttagtgaatttttaatgaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||     
T  16098917 gaacatccatccattaataatctaataatggatagatcagatgaatttatacttaatggatgaattttttagaaaattgtttagtgaa-ttttaatgaat 16099015  T
Q  207 tagtggattttaacgaaaggctttaggttaggcctacaaatttatcataggctagacgcagacctttcaaagcatactctggtctggcctgacctattca 306  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  16099016 tagtggattctaacgaaagactttaggttaggcctacaaatttatcataggctaggctcagacctttcaaagcatactctggtctggcctgacctattca 16099115  T
Q  307 cac 309  Q
    |||    
T  16099116 cac 16099118  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 361
Target Start/End: Original strand, 33856186 - 33856316
Alignment:
Q  221 gaaaggctttaggttaggcctacaaatttatcataggctagacgcagacctttcaaagcatactctggtctggcctgacctattcacacctttattttag 320  Q
    |||||||  |||| ||| ||||||||||||||||||||||| | ||| ||||||||||| || ||| |          |||||||||||| |||||| ||    
T  33856186 gaaaggccataggctagacctacaaatttatcataggctaggctcaggcctttcaaagcctagtctag----------cctattcacacccttatttaag 33856275  T
Q  321 aggtttcttccggtgcacttgcttttgagataagatttgtt 361  Q
    ||||||||||  ||||||||| |||||||||||||||||||    
T  33856276 aggtttcttctagtgcacttgattttgagataagatttgtt 33856316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 361
Target Start/End: Complemental strand, 33924737 - 33924607
Alignment:
Q  221 gaaaggctttaggttaggcctacaaatttatcataggctagacgcagacctttcaaagcatactctggtctggcctgacctattcacacctttattttag 320  Q
    |||||||  |||| ||| ||||||||||||||||||||||| | ||| ||||||||||| || ||| |          |||||||||||| |||||| ||    
T  33924737 gaaaggccataggctagacctacaaatttatcataggctaggctcaggcctttcaaagcctagtctag----------cctattcacacccttatttaag 33924648  T
Q  321 aggtttcttccggtgcacttgcttttgagataagatttgtt 361  Q
    ||||||||||  ||||||||| |||||||||||||||||||    
T  33924647 aggtttcttctagtgcacttgattttgagataagatttgtt 33924607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 33855785 - 33855857
Alignment:
Q  86 actttattatatggatcggatgaacatc----catccattaataatctaataatggatagatcagatgaattt 154  Q
    |||||| |||||||||||||||||||||    |||||||||||||||||||||| |||||||| |||||||||    
T  33855785 actttaatatatggatcggatgaacatccatccatccattaataatctaataattgatagatcggatgaattt 33855857  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 33925138 - 33925066
Alignment:
Q  86 actttattatatggatcggatgaacatccatccat----taataatctaataatggatagatcagatgaattt 154  Q
    |||||| ||||||||||||||||||||||||||||    ||||||||||||||| |||||||| |||||||||    
T  33925138 actttaatatatggatcggatgaacatccatccatccattaataatctaataattgatagatcggatgaattt 33925066  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 16104906 - 16104957
Alignment:
Q  312 ttattttagaggtttcttccggtgcacttgcttttgagataagatttgttct 363  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  16104906 ttattttagaggtttcttctagtgcacttggttttgagataagatttgttct 16104957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 74
Target Start/End: Original strand, 33855726 - 33855756
Alignment:
Q  44 ttacataaaatcaatttggattgaattcatt 74  Q
    |||||||||||||||||||||||||||||||    
T  33855726 ttacataaaatcaatttggattgaattcatt 33855756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 74
Target Start/End: Complemental strand, 33925196 - 33925166
Alignment:
Q  44 ttacataaaatcaatttggattgaattcatt 74  Q
    |||||||||||||||||||||||||||||||    
T  33925196 ttacataaaatcaatttggattgaattcatt 33925166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 41934261 - 41934231
Alignment:
Q  113 ccatccattaataatctaataatggatagat 143  Q
    |||||||||||||||||||||||||||||||    
T  41934261 ccatccattaataatctaataatggatagat 41934231  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 31573046 - 31572998
Alignment:
Q  86 actttattatatggatcggatgaacatccatccattaataatctaataa 134  Q
    |||||| ||||||||||  |||||||||||| |||||||||||||||||    
T  31573046 actttaatatatggatcttatgaacatccattcattaataatctaataa 31572998  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 39540654 - 39540594
Alignment:
Q  94 atatggatcggatgaacatccatccattaataatctaataatggatagatcagatgaattt 154  Q
    |||| ||| ||||| |||| |||| ||||||||||||||||||||| ||||| ||| ||||    
T  39540654 atatagattggatggacattcatctattaataatctaataatggatggatcatatggattt 39540594  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 21463242 - 21463285
Alignment:
Q  109 acatccatccattaataatctaataatggatagatcagatgaat 152  Q
    ||||||||||||||||||| |||||||||||  |||||||||||    
T  21463242 acatccatccattaataatataataatggatttatcagatgaat 21463285  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 24888116 - 24888075
Alignment:
Q  98 ggatcggatgaacatccatccattaataatctaataatggat 139  Q
    ||||| |||| | |||||||||||||||||||||||||||||    
T  24888116 ggatctgatggatatccatccattaataatctaataatggat 24888075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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