View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_high_1 (Length: 1023)
Name: NF18715_high_1
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 829; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 829; E-Value: 0
Query Start/End: Original strand, 16 - 1007
Target Start/End: Original strand, 6916394 - 6917393
Alignment:
| Q |
16 |
caagagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgtccctcttaacaatatgtttgggtattctacggct |
115 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6916394 |
caagagaaaaggtgtgattgttggcaatgttcaggacgaagattattctgtcattacagctcatgtgcctcttaacaatatgtttgggtattctacggct |
6916493 |
T |
|
| Q |
116 |
attcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacataca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916494 |
attcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacataca |
6916593 |
T |
|
| Q |
216 |
agggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaatttattgggggtagttatctagaaaaaagaattgtagttttggttcann |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
6916594 |
agggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaattttttgggggtagttatctggaaaaaagaattgtggttttggttcatt |
6916693 |
T |
|
| Q |
316 |
nnnnngggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactccaatgtttttattgggaaacttgat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916694 |
tttttgggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactccaatgtttttattgggaaacttgat |
6916793 |
T |
|
| Q |
416 |
ttaatattaaatttatcatatatttgcgttttcttatattttagttgacacatacatgctcattttcaattctatcatacattgttcagctagtttagat |
515 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916794 |
ttaacattaaatttatcatatatttgcgttttcttatattttagttgacacatacatgctcattttcaattctatcatacattgttcagctagtttagat |
6916893 |
T |
|
| Q |
516 |
ttttgttcacttatcaatgcacttccgactgtaaatctgtgatgaggtgataatcatggcaggcttcttgtatattgttccggtctggccaaaagggcgg |
615 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916894 |
ttttgttcacttatcaatgcacttctgactgtaaa--tgtgatgaggtgataatcatggcaggcttcttgtatattgttccggtctggccaaaagggcga |
6916991 |
T |
|
| Q |
616 |
ccatatccaagtcctttcaacaatttggagttcattgattcattctgaattatcaccttcacaaagctaaggtttagaaacagtcacacagtgacagacg |
715 |
Q |
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| T |
6916992 |
ccatatccaagtcctttcaacaatttggagttcattgattcattctgaattatcaccttcacaaagctaaggtctagaaacagtcacacagtgacagacg |
6917091 |
T |
|
| Q |
716 |
cagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcattcacggcggcgacagtgaagtctccgttgaaccg |
815 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6917092 |
cagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcattcacggcggcgacagtgaagtctccgccaaaccg |
6917191 |
T |
|
| Q |
816 |
ccttcattagtcaaagct-------cgccattgacagcaccccgagtttcccatggacacgctcagagattgatcctgaagccgcagcagtttgagacga |
908 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917192 |
ccttcattagtcaaagctcgagcagcgccattgacagcacgccgagtttcccacagacacgctcagagattgatcctgaagccgcagcagtttgagacga |
6917291 |
T |
|
| Q |
909 |
gtccgctcccgtatctggcaatcagtttgagctgtgctgtgctcgtggaagcctagccgcccaggaga--ccgcccaagaatt-atctgaagccgtgttc |
1005 |
Q |
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||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||| |
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| T |
6917292 |
gtctgctcccgtatctggcaaacagtttgagctgtgccatgctcgtggaagcgtagccacccaggagaggccgcccaagaattgatctgaagccgtgttc |
6917391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 500 - 588
Target Start/End: Original strand, 6890644 - 6890724
Alignment:
| Q |
500 |
ttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaaatctgtgatgaggtgataatcatggcaggcttcttgtat |
588 |
Q |
| |
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||||||||||||||||||| |||||||| |||||| ||||| ||||||| ||||||||||| |||||||||||||||||||| |
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| T |
6890644 |
ttcagctagtttagattttggttcacttgtcaatgtacttctgactgta--------atgaggtgatattcatggcaggcttcttgtat |
6890724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 6e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 15036049 - 15035941
Alignment:
| Q |
131 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcag |
230 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatacaagggcaataaggcac |
15035950 |
T |
|
| Q |
231 |
ctgaatgat |
239 |
Q |
| |
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||||||||| |
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|
| T |
15035949 |
ctgaatgat |
15035941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
80 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
134 |
Q |
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|||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
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| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
19 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
81 |
Q |
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|||||| ||| |||||||||||||||||||||||| |||||| |||||||| | ||||||||| |
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| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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