View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_high_11 (Length: 259)
Name: NF18715_high_11
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 8177187 - 8177429
Alignment:
| Q |
1 |
atcccttgaccccaatagttgaatccaatagcataacccatatctgctttatacttctcatcattagcatgaggaagaatccaaaccattccaatggagt |
100 |
Q |
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| T |
8177187 |
atcccttgaccccaatagttgaatccaatagcataacccatatctgctttatatttctcatcattagcatgaggaagaatccaaaccattccaatggagt |
8177286 |
T |
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| Q |
101 |
ggtcatcaagacatattgattggcggattgggtaaatgcattcattttttatgaaatccaaaccttctttctttgaattacaagtttccaatcgagtatc |
200 |
Q |
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| T |
8177287 |
ggtcatcaagacatattgattggcggattgggtaaatgcattcattttttatgaaatccaaagcttctttctttgaattacaagtttccaatcgagtatc |
8177386 |
T |
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| Q |
201 |
ctcaattactctttcatctcctagccataataacacatcatct |
243 |
Q |
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| T |
8177387 |
ctcaattactctttcatctcctagccataataacacatcatct |
8177429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 8169606 - 8169756
Alignment:
| Q |
4 |
ccttgaccccaatagttgaatccaatagcataacccatatctgctttatacttctcatcattagcatgaggaagaatccaaaccattccaatggagtggt |
103 |
Q |
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| T |
8169606 |
ccttggccccaatagttaaacccaatagcataacctaaatctgctttaaactttgcatca---ggataaggaaggacaaaaacaattccaatagagtgat |
8169702 |
T |
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| Q |
104 |
catcaagacatattgattggcggattgggtaaatgcattcattttttatgaaat |
157 |
Q |
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| T |
8169703 |
cattaagacatattgattgttggaatgggtaaatgcaatcattttttatgaaat |
8169756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 8172237 - 8172392
Alignment:
| Q |
4 |
ccttgaccccaatagttgaatccaatagcataacccatatctgctttatacttctcatcattagcatgaggaagaatccaaaccattccaatggagtggt |
103 |
Q |
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| T |
8172237 |
ccttggccccaataattgaatccaatagcaaaacctaaatctgctttaaactttgcataa---gaaattggaagaacaaaaacaattccaatagagtgat |
8172333 |
T |
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| Q |
104 |
catcaagacatattgattggcggattgggtaaatgcattcattttttatgaaatccaaa |
162 |
Q |
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| T |
8172334 |
catcaagacatattgattgttggaatgggtaaatacaatctttctttatgaaattcaaa |
8172392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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