View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_high_13 (Length: 249)
Name: NF18715_high_13
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 56538193 - 56537954
Alignment:
| Q |
1 |
atggattaaaaacaataaccagatgaatgaaaaactgagtgaaaaacctccgatgacaaacagtaaaatctaaagtagatcatcaacatacaaacatann |
100 |
Q |
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| T |
56538193 |
atggattaaaaacaataaccacatgaatgaaaaactgagtgaaaaacctccgatgacaaacagtaaaatctaaagtagatcatcaacatacaaacatatt |
56538094 |
T |
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| Q |
101 |
nnnnnaaaaatattctgtccactaaattaactgaaaaataggtacactacagttcccgtaaacacaaaagtgaattgaattgaatttgtacttaagtttg |
200 |
Q |
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| T |
56538093 |
ttttttaaaatattctgtccactaaattaactgaaaaataggtacactacagttcccgtaaacacaaaagtgaattgaatttaatttgtacttaagattg |
56537994 |
T |
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| Q |
201 |
aacttaccaagacccagaaactccgtccacaagccctttg |
240 |
Q |
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| T |
56537993 |
aacttaccaagacccagaaactccgtccacaagccctttg |
56537954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 6314485 - 6314399
Alignment:
| Q |
110 |
atattctgtccactaaattaactgaaaaataggtacactacagttcccgtaaacacaaaagtgaattgaattgaatttgtacttaag |
196 |
Q |
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| T |
6314485 |
atattctgtttactaaattaactgaaaaataggtacactacagttcccataaacacaaaagtgagttgaatttaatttgtacttaag |
6314399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 6314313 - 6314278
Alignment:
| Q |
201 |
aacttaccaagacccagaaactccgtccacaagccc |
236 |
Q |
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| T |
6314313 |
aacttaccaagacccagaaactccatccacaagccc |
6314278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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