View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_high_18 (Length: 218)
Name: NF18715_high_18
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 50277735 - 50277830
Alignment:
| Q |
106 |
gggggagattattacactgttgaatgttccatactgcaagttacgtgcaacaacagtgacattgttagactttgcaccaaacacatgcctgaatat |
201 |
Q |
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| T |
50277735 |
gggggagattattacactgttgaatgttccatactgcaagttacttgcaacaacagtgacattgttagactttgcaccaaacacatgcctgaatat |
50277830 |
T |
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Target: chr1; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 50289403 - 50289498
Alignment:
| Q |
106 |
gggggagattattacactgttgaatgttccatactgcaagttacgtgcaacaacagtgacattgttagactttgcaccaaacacatgcctgaatat |
201 |
Q |
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| T |
50289403 |
gggggagattattacactgttgaatgttccatactgcaagttacttgcaacaacagtgacattgttagactttgcaccaaacacatgcctgaatat |
50289498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 50277612 - 50277695
Alignment:
| Q |
1 |
ccatgcctgaagaagaagctgaaccaatgttctatacaatacacaacattgaatcagataaggctgttagttttacacaaaact |
84 |
Q |
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| T |
50277612 |
ccatgcctgaagaagaagctgaaccaatgttctatacaatacacaacattgaatcagataaggctgttagttttacacaaaact |
50277695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 50281636 - 50281719
Alignment:
| Q |
1 |
ccatgcctgaagaagaagctgaaccaatgttctatacaatacacaacattgaatcagataaggctgttagttttacacaaaact |
84 |
Q |
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| T |
50281636 |
ccatgcctgaagaagaagctgaaccaatgttctatacaatacacaacattgaatcagataaggctgttagttttacacaaaact |
50281719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 50289280 - 50289363
Alignment:
| Q |
1 |
ccatgcctgaagaagaagctgaaccaatgttctatacaatacacaacattgaatcagataaggctgttagttttacacaaaact |
84 |
Q |
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| T |
50289280 |
ccatgcctgaagaagaagctgaaccaatgttctatacaatacacaacattgaatcagataaggctgttagttttacacaaaact |
50289363 |
T |
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