View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_high_3 (Length: 518)
Name: NF18715_high_3
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 40 - 503
Target Start/End: Complemental strand, 7089339 - 7088876
Alignment:
| Q |
40 |
ttgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatca |
139 |
Q |
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| T |
7089339 |
ttgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatca |
7089240 |
T |
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| Q |
140 |
ttggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatggttaatgcattat |
239 |
Q |
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| T |
7089239 |
ttggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtctcctcaatcaatccacattttttcatggttaatgcattat |
7089140 |
T |
|
| Q |
240 |
tattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtctttgct |
339 |
Q |
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| T |
7089139 |
tattctactgtttacttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtcttcgct |
7089040 |
T |
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| Q |
340 |
tccatcgagttgcaagttgcaacaaaaggttcatatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagtagcaactgtatcttat |
439 |
Q |
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| T |
7089039 |
tccatcgagttgcaagttgcaacaaaaggttcatatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagtagcaactgtatcttat |
7088940 |
T |
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| Q |
440 |
gaactcaatgttcttcgtacgagagggccgaggcgactgcggagtacaatgcacttaatcccca |
503 |
Q |
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| T |
7088939 |
gaactcaatgttcttcgtacgagaggtccaaggcgaatgcggagtacaatgcacttaatcccca |
7088876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 35 - 426
Target Start/End: Complemental strand, 7668684 - 7668293
Alignment:
| Q |
35 |
gtgaattgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaa |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| |
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| T |
7668684 |
gtgaattgtgttattgtatttgcagctctttctggtgat--gagcaaacttctcttggctgcaaagaagattagaagagcaacatgcacaaattttttaa |
7668587 |
T |
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| Q |
135 |
tatcattggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatggttaatgc |
234 |
Q |
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| T |
7668586 |
tatcattggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcccatatcaattcacatctttt-aaggctaatgc |
7668488 |
T |
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| Q |
235 |
attattattctactgtttacttgatcattaagc-aatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtc |
333 |
Q |
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| T |
7668487 |
attattattctagtgcttagttgatcattaagcaaaataacaggtctaattttctcggcaccaagttcacgatcttggatggtcatcctccacatgtttc |
7668388 |
T |
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| Q |
334 |
tttgcttccatcgagttgcaagttgcaacaaaaggttc--atatgaagcaagtacttccaagggctgctcctgctcctgctaactataaagtagc |
426 |
Q |
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|| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||| |||||||||| |||||| |||||||||||| |
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| T |
7668387 |
ttcgcttccatcgagttgcaagttgcaacaaaaggtccatatatgaagcaagtatttcctagggttgctcctgctactgctagctataaagtagc |
7668293 |
T |
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