View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_high_8 (Length: 285)
Name: NF18715_high_8
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_high_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 14461588 - 14461319
Alignment:
| Q |
16 |
atgcaaccacataaataaatgtatcagcagcagaaatgtaacataatttaaatttgaattagatagcacaaagtcacaataaaagtggtagnnnnnnntc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14461588 |
atgcaaccacataaataaatgtatcagcagcagaaatgtaacataatttaaatttgaattagatagcacaaagtcacaataaaagtggtagaaaaaaatc |
14461489 |
T |
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| Q |
116 |
aacaaccttgtgctcatcagattgacccttagtcttgcattgatcgttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14461488 |
aacaaccttgtgctcatcagattgacccttagtcttgcattgatccttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacg |
14461389 |
T |
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| Q |
216 |
gttgataaacactgaaaaataaggacattcctactcttcatacatcaaatatacacacatagatattgaa |
285 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
14461388 |
gttgataaacaccgaaaaataaggacattcccactcttcatacatcaaatatatacacatagatattgaa |
14461319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 50281296 - 50281546
Alignment:
| Q |
16 |
atgcaaccacataaataaatgtatcagcagcagaaatgtaacataatttaaatttgaattagatagcacaaagtcacaataaaagtggtagnnnnnnntc |
115 |
Q |
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| T |
50281296 |
atgcaaccacataaataaatgtatcagcagcagaaatgtaacataatttaaatttgaattagatagcacaaagtcacaataaa----------------- |
50281378 |
T |
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| Q |
116 |
aacaaccttgtgctcatcagattgacccttagtcttgcattgatcgttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50281379 |
--caaccttgtgctcatcagattgacccttagtcttgcattgatccttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacg |
50281476 |
T |
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| Q |
216 |
gttgataaacactgaaaaataaggacattcctactcttcatacatcaaatatacacacatagatattgaa |
285 |
Q |
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| T |
50281477 |
gttgataaacactgaaaaataaggacattcccactcttcatacatcaaatatatacacatagatattgaa |
50281546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 50288940 - 50289190
Alignment:
| Q |
16 |
atgcaaccacataaataaatgtatcagcagcagaaatgtaacataatttaaatttgaattagatagcacaaagtcacaataaaagtggtagnnnnnnntc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50288940 |
atgcaaccacataaataaatgtatcagcagcagaaatgtaacataatttaaatttgaattagatagcacaaagtcacaataaa----------------- |
50289022 |
T |
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| Q |
116 |
aacaaccttgtgctcatcagattgacccttagtcttgcattgatcgttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacg |
215 |
Q |
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| T |
50289023 |
--caaccttgtgctcatcagattgacccttagtcttgcattgatccttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacg |
50289120 |
T |
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| Q |
216 |
gttgataaacactgaaaaataaggacattcctactcttcatacatcaaatatacacacatagatattgaa |
285 |
Q |
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| T |
50289121 |
gttgataaacactgaaaaataaggacattcccactcttcatacatcaaatatatacacatagatattgaa |
50289190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 50277272 - 50277522
Alignment:
| Q |
16 |
atgcaaccacataaataaatgtatcagcagcagaaatgtaacataatttaaatttgaattagatagcacaaagtcacaataaaagtggtagnnnnnnntc |
115 |
Q |
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| T |
50277272 |
atgcaaccacataaataaatgtatcagcagcagaaatgtaacataatttaaatttgaattagatagcacaaagtcacaataaa----------------- |
50277354 |
T |
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| Q |
116 |
aacaaccttgtgctcatcagattgacccttagtcttgcattgatcgttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50277355 |
--caaccttgtgctcatcagattgacccttagtcttgcattgatccttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacg |
50277452 |
T |
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| Q |
216 |
gttgataaacactgaaaaataaggacattcctactcttcatacatcaaatatacacacatagatattgaa |
285 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
50277453 |
gttgataaacacagaaaaataaggacattcccactcttcatacatcaaatatatacacatagatattgaa |
50277522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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