View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_low_13 (Length: 273)
Name: NF18715_low_13
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 132 - 266
Target Start/End: Original strand, 8177035 - 8177169
Alignment:
| Q |
132 |
cctttctgagcataccctctttatggaaccctaccttttccaacaccctttgagaagctatgttctgtagaacagtataagcttgcaaccttctcaaatc |
231 |
Q |
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| T |
8177035 |
cctttctgagcataccctctttatggaaccctaccttttccaacaccctctgagaagctatgttctgtagaacagtataagcttgcaaccttctcaaatc |
8177134 |
T |
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| Q |
232 |
tgggaactcatggaacacttttgacagaataatct |
266 |
Q |
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| T |
8177135 |
tgggaactcatggaacacttttgacagaagaatct |
8177169 |
T |
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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 8176921 - 8176983
Alignment:
| Q |
19 |
attcctataacaccaaatacaactaaa-tactaactaaacaacagagggaatttcatctgtcc |
80 |
Q |
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| T |
8176921 |
attcctataacaccaaatacaactaaaatactaactaaacaacagagggaatttcatctgtcc |
8176983 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 25503279 - 25503336
Alignment:
| Q |
133 |
ctttctgagcataccctctttatggaaccctaccttttccaacaccctttgagaagct |
190 |
Q |
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| T |
25503279 |
ctttctgagtataccctccctaaggaacccaaccttttccaagaccctctgagaagct |
25503336 |
T |
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