View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_low_14 (Length: 263)
Name: NF18715_low_14
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 249
Target Start/End: Original strand, 35826083 - 35826238
Alignment:
| Q |
111 |
aaagaataatattgaaaatatgtttgtttgaattttttgaaaacatcttcttaagggacatttctgaaaaagagttgaaaattaaaa------------- |
197 |
Q |
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| T |
35826083 |
aaagaataatattgaaaatatgtttgttttaattttttgaaaacattttcttaagggacatttctgaaaaagagttgaaaattaaaacaaaaaattgacg |
35826182 |
T |
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| Q |
198 |
----caaaagttgaaaatgcggtggcatgcattgtagttttagagaagtttgttct |
249 |
Q |
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| T |
35826183 |
tatccaaaagttgaaaatgcggtggcatgcattgtagttttagaaaagtttgttct |
35826238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 35825896 - 35825982
Alignment:
| Q |
13 |
aatatgaacaccacatgtatatatgacatagtaatatagaacaagaacaaagtgctcatagagaacacacttcgttgacaaaacaca |
99 |
Q |
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| T |
35825896 |
aatatgaacaccacatgtatatatgacatagtaatatagaacaagaacaaagtgctcatagagaacacacttcgttgaccaaacaca |
35825982 |
T |
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