View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18715_low_17 (Length: 254)

Name: NF18715_low_17
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18715_low_17
NF18715_low_17
[»] chr3 (2 HSPs)
chr3 (1-240)||(15002343-15002582)
chr3 (124-195)||(15002139-15002210)
[»] chr7 (2 HSPs)
chr7 (133-195)||(17944565-17944627)
chr7 (122-199)||(37223830-37223907)
[»] chr2 (1 HSPs)
chr2 (122-193)||(23974903-23974974)
[»] chr1 (1 HSPs)
chr1 (133-195)||(4119115-4119177)
[»] chr8 (2 HSPs)
chr8 (122-195)||(21373446-21373519)
chr8 (134-195)||(24196171-24196232)
[»] chr5 (2 HSPs)
chr5 (133-176)||(15226180-15226223)
chr5 (133-197)||(22587024-22587088)
[»] chr4 (4 HSPs)
chr4 (122-177)||(7833802-7833857)
chr4 (144-193)||(18977185-18977234)
chr4 (122-195)||(38978713-38978786)
chr4 (137-197)||(19987937-19987997)
[»] scaffold0251 (1 HSPs)
scaffold0251 (137-197)||(12598-12658)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 15002582 - 15002343
Alignment:
Q  1 tttgttgatccaatattactttggttcgttggaggtccaggatgctctgctctttcagcattctttttcgaaaatggtagagagatacaagttccttttt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15002582 tttgttgatccaattttactttggttcgttggaggtccaggatgctctgctctttcagcattctttttcgaaaatggtagagagatacaagttccttttt 15002483  T
Q  101 atactatgataattgataagtcattaggtgatagagcctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaacattacg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15002482 atactatgataattgataagtcattaggtgatagagcctcatggcttaagtactacgtcgagcacttttaactactcgatatagaactcctaacattacg 15002383  T
Q  201 tttttcactctattggcactcgcctgttggtagccctttc 240  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  15002382 tttttcactctattggcactcgcctgatggtagccctttc 15002343  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 15002210 - 15002139
Alignment:
Q  124 ttaggtgatagagcctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaaca 195  Q
    |||||||| |||| |||||| |||||| || ||||||| ||||||||||||||||||||||||||| |||||    
T  15002210 ttaggtgaaagaggctcatgacttaagcaccacgtcgaacacttttatctactcgatatagaactcataaca 15002139  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 17944627 - 17944565
Alignment:
Q  133 agagcctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaaca 195  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| | | ||||||||||    
T  17944627 agagcctcatggcttaagtaccacatcgagcacttttatctactcgatgtgggactcctaaca 17944565  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 37223907 - 37223830
Alignment:
Q  122 cattaggtgatagagcctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaacattac 199  Q
    |||||||||  |||| ||||||||||||||||  | | |||||||||||||||||| || | | |||||| |||||||    
T  37223907 cattaggtgggagagtctcatggcttaagtacctcattgagcacttttatctactcaatgtgggactccttacattac 37223830  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 23974974 - 23974903
Alignment:
Q  122 cattaggtgatagagcctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaa 193  Q
    |||||||||| |||| |||||||||||||||| || | ||||||||||| ||||||||| | ||||||||||    
T  23974974 cattaggtgaaagagtctcatggcttaagtaccacattgagcacttttaactactcgatgtggaactcctaa 23974903  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 4119177 - 4119115
Alignment:
Q  133 agagcctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaaca 195  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||| | | ||||||||||    
T  4119177 agagcctcatggcttaagtaccatgtcgaacacttttatctactcgatgtgggactcctaaca 4119115  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 21373446 - 21373519
Alignment:
Q  122 cattaggtgatagagcctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaaca 195  Q
    |||||||||  |||||| ||||| |||||||| | || ||||||||||||||||||||| ||||| ||||||||    
T  21373446 cattaggtggaagagccgcatggattaagtaccatgttgagcacttttatctactcgatgtagaaatcctaaca 21373519  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 24196171 - 24196232
Alignment:
Q  134 gagcctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaaca 195  Q
    ||||||||| ||||||| || |||||||  ||||||||||| ||||| | ||||||||||||    
T  24196171 gagcctcatagcttaagcaccacgtcgataacttttatctaatcgatgtggaactcctaaca 24196232  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 15226180 - 15226223
Alignment:
Q  133 agagcctcatggcttaagtactacgtcgagcacttttatctact 176  Q
    |||||||||| |||||||||| |||||| |||||||||||||||    
T  15226180 agagcctcatagcttaagtaccacgtcgggcacttttatctact 15226223  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 22587024 - 22587088
Alignment:
Q  133 agagcctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaacatt 197  Q
    |||||||||||||||||||||||| || | ||||||||  |||||||| | | |||| |||||||    
T  22587024 agagcctcatggcttaagtactacatcaaacacttttagttactcgatgtgggactcgtaacatt 22587088  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 7833802 - 7833857
Alignment:
Q  122 cattaggtgatagagcctcatggcttaagtactacgtcgagcacttttatctactc 177  Q
    |||||||||  ||||||||||| ||||||||| || || |||||||||||||||||    
T  7833802 cattaggtgggagagcctcatgacttaagtaccacatcaagcacttttatctactc 7833857  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 18977234 - 18977185
Alignment:
Q  144 gcttaagtactacgtcgagcacttttatctactcgatatagaactcctaa 193  Q
    |||||||||| ||||||| ||||||||||| |||||||| | ||||||||    
T  18977234 gcttaagtaccacgtcgaacacttttatctgctcgatatgggactcctaa 18977185  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 38978786 - 38978713
Alignment:
Q  122 cattaggtgatagagcctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaaca 195  Q
    |||||||||  |||||||||||| |||||||| || || | ||||||||||||||| || | | ||||||||||    
T  38978786 cattaggtggaagagcctcatggtttaagtaccacatcaaacacttttatctactccatgtgggactcctaaca 38978713  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 19987997 - 19987937
Alignment:
Q  137 cctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaacatt 197  Q
    ||||||||||||||||| || || |||| ||| ||||||||||| | | ||||||||||||    
T  19987997 cctcatggcttaagtaccacatcaagcattttgatctactcgatgtgggactcctaacatt 19987937  T

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Target: scaffold0251 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 12658 - 12598
Alignment:
Q  137 cctcatggcttaagtactacgtcgagcacttttatctactcgatatagaactcctaacatt 197  Q
    ||||||||||||||||  || || |||||||| ||||||||||| | | ||||||||||||    
T  12658 cctcatggcttaagtaacacatcaagcactttgatctactcgatgtgggactcctaacatt 12598  T

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