View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18715_low_19 (Length: 242)
Name: NF18715_low_19
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 26523640 - 26523854
Alignment:
| Q |
18 |
actatgataatctcaaatcaaa----agacacaacacacctacactttgtttccacccaaaattttnnnnnnnnnnnnntacaactggcaatatattttt |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26523640 |
actatgataatctcaaatcaaaccaaagacacaacacacctacactttgtttccacccaaaattttaaaaaataaaaaatacaactggcaatatattttt |
26523739 |
T |
|
| Q |
114 |
acaccttccaagccctaatttaataatattttcgtttaccacaagttcactctattttgcctcgatattttaacctatctagatttgaatcacgaactct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26523740 |
acaccttccaagccctaatttaataatatttttgtttaccacaagttcactctattttgcctcgatattttaacctatctagatttgaatcacgaactct |
26523839 |
T |
|
| Q |
214 |
cctcattccttcctc |
228 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26523840 |
cctcattccttcctc |
26523854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University