View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_low_2 (Length: 592)
Name: NF18715_low_2
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Original strand, 6003801 - 6004302
Alignment:
| Q |
16 |
ctaacaaccacaaatgtgctgattacatgaatttccgagtatatcaaatcctactcagaaacaattggcttagattcaacgactctgcagcaagttgtca |
115 |
Q |
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| T |
6003801 |
ctaacgaccacaaatgtgctgattacatgaatttccgagtatatcaaatccaactcagaaataattggcttagattcaacgactcagcagcaagttgtca |
6003900 |
T |
|
| Q |
116 |
taaaaataattgcatttttatggtgtcctaagattataaatatgaattatgtataaaacaggtaccatacatcaagaacgccattttggacaaccaatct |
215 |
Q |
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| T |
6003901 |
taaaaataattgcatttttatggtgtcctaagattataaatatgaattatgtataaaacaagtaccatacatcaagaacaccattttggacaaccaatct |
6004000 |
T |
|
| Q |
216 |
tccagatgcaatagtagcaccaccggctaggaaacttgagtgttgaaattggcctttcttcttctctccaacatacaaaattctggatgagctaagaaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6004001 |
tccagatgcaatagtagcaccaccggctaggaaacttgagtgttgaaattggcctttcttcttctctccaacatacaaaattctggatgagctaagaaca |
6004100 |
T |
|
| Q |
316 |
aaaatccacttagatccttcacaagtgtgtacaaggttcttgctttttctataaacaaatcttccttcctctataataacttcgtatacttccctctctt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |
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| T |
6004101 |
aaaatccacttagatccttcacaagtgtgtacaaggttcttgctttttctataaacaagccttccttcctctataataacttcatatacttccctttctt |
6004200 |
T |
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| Q |
416 |
tctgcataagcaat---------nnnnnnnngtggaacctcttaaaattaatagagaatattttggtggctgctcaatatattaaataaagtcaaactat |
506 |
Q |
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| T |
6004201 |
tctgcataagcaataaaaaaataaaaataaaaaggaacctcttataattaatagagaatattttggtggctgctcaatatattaaataaagtcaaactat |
6004300 |
T |
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| Q |
507 |
tg |
508 |
Q |
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|| |
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| T |
6004301 |
tg |
6004302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 532 - 580
Target Start/End: Original strand, 6004338 - 6004386
Alignment:
| Q |
532 |
acaaatgaacgcactaacacatgattttattgatagtttattagtccta |
580 |
Q |
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| T |
6004338 |
acaaatgaacgcactaacacatgattttattgatagtttattagtccta |
6004386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 213 - 361
Target Start/End: Original strand, 42816394 - 42816542
Alignment:
| Q |
213 |
tcttccagatgcaatagtagcaccaccggctaggaaacttgagtgttgaaattggcctttcttcttctctccaacatacaaaattctggatgagctaaga |
312 |
Q |
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| T |
42816394 |
tcttccagatgcaatggtaggagcaccagctacaaaacttgagtgttgaaatttgcctttttccttctgtccaacatacaaaactctagacgagctaaga |
42816493 |
T |
|
| Q |
313 |
acaaaaatccacttagatccttcacaagtgtgtacaaggttcttgcttt |
361 |
Q |
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| T |
42816494 |
acaaaaatccacttagatccgtcggttgtgtgtacaaggttattgcttt |
42816542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 23903123 - 23903030
Alignment:
| Q |
235 |
ccaccggctaggaaacttgagtgttgaaattggcctttcttcttctctccaacatacaaaattctggatgagctaagaacaaaaatccacttag |
328 |
Q |
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| T |
23903123 |
ccaccagctaggaagcttgaatgttgaaatgtgcccttgttcttctgcccaacatacaatgtcttggatgtgctaagtacaaaaatccacttag |
23903030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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