View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_low_22 (Length: 232)
Name: NF18715_low_22
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 6916394 - 6916592
Alignment:
| Q |
16 |
caagagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgtccctcttaacaatatgtttgggtattctacggct |
115 |
Q |
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| T |
6916394 |
caagagaaaaggtgtgattgttggcaatgttcaggacgaagattattctgtcattacagctcatgtgcctcttaacaatatgtttgggtattctacggct |
6916493 |
T |
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| Q |
116 |
attcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatac |
214 |
Q |
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| T |
6916494 |
attcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatac |
6916592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 15036049 - 15035966
Alignment:
| Q |
131 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatac |
214 |
Q |
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| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatac |
15035966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
80 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
134 |
Q |
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| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
19 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
81 |
Q |
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| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
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