View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18715_low_4 (Length: 463)

Name: NF18715_low_4
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18715_low_4
NF18715_low_4
[»] chr7 (10 HSPs)
chr7 (370-449)||(6252464-6252543)
chr7 (163-232)||(6252002-6252071)
chr7 (374-430)||(6186846-6186902)
chr7 (374-430)||(6193362-6193418)
chr7 (374-430)||(6203241-6203297)
chr7 (5-76)||(6251928-6251997)
chr7 (169-257)||(6186251-6186339)
chr7 (169-257)||(6192767-6192855)
chr7 (77-108)||(6186195-6186226)
chr7 (77-108)||(6192711-6192742)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 370 - 449
Target Start/End: Original strand, 6252464 - 6252543
Alignment:
Q  370 taacaaaatgacaaaagcgaagactttgtatagaagacttcaaatgaataacctctcaaaaatattcaaatgaatatggt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6252464 taacaaaatgacaaaagcgaagactttgtatagaagacttcaaatgaataacctctcaaaaatattcaaatgaatatggt 6252543  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 6252002 - 6252071
Alignment:
Q  163 ctatcactagtattttctacatgtaaatggtcaattatgtatctttatggataattaaaattgttaattg 232  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6252002 ctatccctagtattttctacatgtaaatggtcaattatgtatgtttatggataattaaaattgttaattg 6252071  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 6186846 - 6186902
Alignment:
Q  374 aaaatgacaaaagcgaagactttgtatagaagacttcaaatgaataacctctcaaaa 430  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6186846 aaaatgacaaaaccgaagactttgtatagaagacttcaaatgaataacctctcaaaa 6186902  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 6193362 - 6193418
Alignment:
Q  374 aaaatgacaaaagcgaagactttgtatagaagacttcaaatgaataacctctcaaaa 430  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6193362 aaaatgacaaaaccgaagactttgtatagaagacttcaaatgaataacctctcaaaa 6193418  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 6203241 - 6203297
Alignment:
Q  374 aaaatgacaaaagcgaagactttgtatagaagacttcaaatgaataacctctcaaaa 430  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6203241 aaaatgacaaaaccgaagactttgtatagaagacttcaaatgaataacctctcaaaa 6203297  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 6251928 - 6251997
Alignment:
Q  5 acaaagatgaagtatgagaggctctcaacacgattgaattttaaagggagtgaacagccgtggacccacaaa 76  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||||| ||||||||||||||||||    
T  6251928 acaaagatgaagtatgagaggctctcaac--gattggattttaaagggagtgagcagccgtggacccacaaa 6251997  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 6186251 - 6186339
Alignment:
Q  169 ctagtattttctacatgtaaatggtcaattatgtatctttatggataattaaaattgttaattgttaattagattcatctatgtatctc 257  Q
    ||||||||||  ||| |||| || ||||||||||||||| || || | |||||||||| ||||||||||||||||||| ||| ||||||    
T  6186251 ctagtattttgaacacgtaattgttcaattatgtatcttcatagacagttaaaattgtaaattgttaattagattcatttatatatctc 6186339  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 6192767 - 6192855
Alignment:
Q  169 ctagtattttctacatgtaaatggtcaattatgtatctttatggataattaaaattgttaattgttaattagattcatctatgtatctc 257  Q
    ||||||||||  ||| |||| || ||||||||||||||| || || | |||||||||| ||||||||||||||||||| ||| ||||||    
T  6192767 ctagtattttgaacacgtaattgttcaattatgtatcttcatagacagttaaaattgtaaattgttaattagattcatttatatatctc 6192855  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 108
Target Start/End: Original strand, 6186195 - 6186226
Alignment:
Q  77 agtttgatattcgtagaacttgcatatcacct 108  Q
    ||||||||||||||||||||||||||||||||    
T  6186195 agtttgatattcgtagaacttgcatatcacct 6186226  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 108
Target Start/End: Original strand, 6192711 - 6192742
Alignment:
Q  77 agtttgatattcgtagaacttgcatatcacct 108  Q
    ||||||||||||||||||||||||||||||||    
T  6192711 agtttgatattcgtagaacttgcatatcacct 6192742  T

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