View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18715_low_8 (Length: 324)

Name: NF18715_low_8
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18715_low_8
NF18715_low_8
[»] chr1 (3 HSPs)
chr1 (42-323)||(4366812-4367078)
chr1 (155-310)||(17561085-17561241)
chr1 (252-301)||(39379409-39379458)
[»] chr7 (13 HSPs)
chr7 (148-301)||(29431340-29431496)
chr7 (148-310)||(29454436-29454601)
chr7 (155-311)||(29898953-29899109)
chr7 (226-285)||(29859101-29859160)
chr7 (148-304)||(29895044-29895197)
chr7 (147-211)||(29922425-29922489)
chr7 (263-311)||(29884953-29885001)
chr7 (42-82)||(29894956-29894996)
chr7 (252-289)||(15572249-15572286)
chr7 (254-298)||(19637571-19637615)
chr7 (252-292)||(22021065-22021105)
chr7 (155-199)||(22088208-22088252)
chr7 (242-306)||(29445984-29446048)
[»] chr4 (1 HSPs)
chr4 (254-302)||(3561305-3561353)
[»] chr2 (2 HSPs)
chr2 (255-297)||(18921079-18921121)
chr2 (257-297)||(18909152-18909192)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 42 - 323
Target Start/End: Complemental strand, 4367078 - 4366812
Alignment:
Q  42 actggtttcgtttatcgaacccagcaaccaggacaacatctgcgatatttggtcgttttcaagattttcgaaactctccacctgaaactttcagctatca 141  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  4367078 actggtttcgtttatggaacccagcaaccaggacaacatctgcgatatttggtcgttttcaagatt---------------ctgaaactttcagctatca 4366994  T
Q  142 tggcaatttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacagagaagcattgtgagg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366993 tggcaatttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacagagaagcattgtgagg 4366894  T
Q  242 attctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggactttggggaatatt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366893 attctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggactttggggaatatt 4366812  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 310
Target Start/End: Complemental strand, 17561241 - 17561085
Alignment:
Q  155 ttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacagagaagcattgtgaggattct-aagtgtg 253  Q
    ||||| ||||||||||| | ||| || || | ||||||||| ||||  || |||||| |||||  ||||  ||| |||| |||||| ||| | |||| ||    
T  17561241 ttcaactttggttgtgatacttccaccgacatttataaggtagtggcttcacgttacaatccatgtcaaaggagtagcaatgtgagaatttttaagtttg 17561142  T
Q  254 ggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggac 310  Q
    |||||||||||||||||||||||| ||||||| ||  ||||||||||| ||||||||    
T  17561141 ggtgataacgtttggagagatattcaaagtttcccggttgttcctcttgatttggac 17561085  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 39379458 - 39379409
Alignment:
Q  252 tgggtgataacgtttggagagatattgaaagttttcctattgttcctctt 301  Q
    |||||||||| ||||||||| ||||||||||||| ||  |||||||||||    
T  39379458 tgggtgataatgtttggagaaatattgaaagtttcccggttgttcctctt 39379409  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 148 - 301
Target Start/End: Complemental strand, 29431496 - 29431340
Alignment:
Q  148 tttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaa---tcaacagagaagcattgtgaggatt 244  Q
    |||||| || || ||||||| ||||||| |||| || |||||||||||||||| |||||||||| |||||||   | ||| |||||||| ||| |  |||    
T  29431496 tttcaagtttaactttggttttgacaatgcaaccgacacttataaggtggtggcgtcccgttacaatccaaaagatgaactgagaagcaatgtcaaaatt 29431397  T
Q  245 ctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctctt 301  Q
     ||||| || ||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  29431396 ttaagtttgagtgataatgtttggagagatattgaaagtttccctgttgttcctctt 29431340  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 148 - 310
Target Start/End: Complemental strand, 29454601 - 29454436
Alignment:
Q  148 tttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacag---agaagcattgtgaggatt 244  Q
    |||||| ||||| ||||| | |||||||||||||||||| || || | ||||| |||||||||| ||||| | || ||    ||||||| ||| |  |||    
T  29454601 tttcaagttcaactttggctatgacaattcaactgatacctagaaagcggtggcgtcccgttacgatccagaacatcactgcagaagcaatgtcaaaatt 29454502  T
Q  245 ctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggac 310  Q
    |||||| ||  |||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  29454501 ctaagtttgcatgataatgtttggagagatattgaaagtttccctgttgctcctcttcatttggac 29454436  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 311
Target Start/End: Original strand, 29898953 - 29899109
Alignment:
Q  155 ttcaagtttggttgtgacaattcaa-ctgatacttataaggtggtggtgtcccgttaccatccaaatcaacagagaagcattgtgaggattctaagtgtg 253  Q
    ||||| ||||||| ||||||||||| | || ||||||||||||||||  | ||||||| |||||  || |  |||||||| |||||  ||||| ||| |     
T  29898953 ttcaaatttggttttgacaattcaaacaga-acttataaggtggtggcataccgttacaatccagttcgattgagaagcaatgtgaaaattctcagtttt 29899051  T
Q  254 ggtgataacgtttggagagatattgaaagttttcctattgttcctcttcatttggact 311  Q
    |||||||| ||||||||||||||||||||||| ||  ||||||||||||||| |||||    
T  29899052 ggtgataatgtttggagagatattgaaagtttcccagttgttcctcttcattcggact 29899109  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 29859101 - 29859160
Alignment:
Q  226 gagaagcattgtgaggattctaagtgtgggtgataacgtttggagagatattgaaagttt 285  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  29859101 gagaagcaatgtgagaattctaagtttgggtgataacgtttggagagatattgaaagttt 29859160  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 29895044 - 29895197
Alignment:
Q  148 tttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttaccatccaaatcaacagagaagcattgtgaggattcta 247  Q
    |||||| |||| |||||||| |||||||||||| |  |||||||||||||||| ||   ||| | |||||  | || ||||||||||||| || ||||||    
T  29895044 tttcaagttcaggtttggttatgacaattcaaccggcacttataaggtggtggcgtattgttgcaatccacttgaaaagagaagcattgtcagaattcta 29895143  T
Q  248 agtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcat 304  Q
    | |||||||   ||| |||||||||||||||||||||| |||  ||| |||||||||    
T  29895144 actgtgggt---aacttttggagagatattgaaagtttccctgctgtccctcttcat 29895197  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 29922489 - 29922425
Alignment:
Q  147 atttcaacttcaagtttggttgtgacaattcaactgatacttataaggtggtggtgtcccgttac 211  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||||||| ||| || |||||||    
T  29922489 atttcaatttcaaatttggttttgacaattcaactgatacttataaggtgttggcgttccgttac 29922425  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 29884953 - 29885001
Alignment:
Q  263 gtttggagagatattgaaagttttcctattgttcctcttcatttggact 311  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  29884953 gtttggagagatattgaaagttttccagttgttcctcttcatctggact 29885001  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 29894956 - 29894996
Alignment:
Q  42 actggtttcgtttatcgaacccagcaaccaggacaacatct 82  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  29894956 actggtttcgtttatcgaacccagccaccaggacaacatct 29894996  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 15572286 - 15572249
Alignment:
Q  252 tgggtgataacgtttggagagatattgaaagttttcct 289  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  15572286 tgggtgataacgtttggagagatattgattgttttcct 15572249  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 19637615 - 19637571
Alignment:
Q  254 ggtgataacgtttggagagatattgaaagttttcctattgttcct 298  Q
    |||||||| ||||||||| ||||| ||||||||||||| ||||||    
T  19637615 ggtgataaagtttggagaaatattcaaagttttcctatggttcct 19637571  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 22021065 - 22021105
Alignment:
Q  252 tgggtgataacgtttggagagatattgaaagttttcctatt 292  Q
    |||| ||||| ||||||||| ||||||||||||||||||||    
T  22021065 tgggcgataatgtttggagaaatattgaaagttttcctatt 22021105  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 22088208 - 22088252
Alignment:
Q  155 ttcaagtttggttgtgacaattcaactgatacttataaggtggtg 199  Q
    ||||||||||||| ||| |||||||| || |||||||||||||||    
T  22088208 ttcaagtttggttatgataattcaacagaaacttataaggtggtg 22088252  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 29446048 - 29445984
Alignment:
Q  242 attctaagtgtgggtgataacgtttggagagatattgaaagttttcctattgttcctcttcattt 306  Q
    ||||||||| | |||||||| ||||||||| | ||| ||||||| ||  ||||||||||||||||    
T  29446048 attctaagtataggtgataatgtttggagacagattcaaagtttccccgttgttcctcttcattt 29445984  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 3561353 - 3561305
Alignment:
Q  254 ggtgataacgtttggagagatattgaaagttttcctattgttcctcttc 302  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  3561353 ggtgataatgtttggagaaatattgaaagttttcctattgttcctcttc 3561305  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 18921121 - 18921079
Alignment:
Q  255 gtgataacgtttggagagatattgaaagttttcctattgttcc 297  Q
    ||||||| |||||||| |||||| |||||||||||||||||||    
T  18921121 gtgataatgtttggagggatattcaaagttttcctattgttcc 18921079  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 18909192 - 18909152
Alignment:
Q  257 gataacgtttggagagatattgaaagttttcctattgttcc 297  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  18909192 gataatgtttggagagatattccaagttttcctattgttcc 18909152  T

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