View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18715_low_9 (Length: 322)
Name: NF18715_low_9
Description: NF18715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18715_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 15002615 - 15002758
Alignment:
| Q |
1 |
acatttgcacctttgctccttctcccactcctacgtatctacaaaatacacagccataattggctaattagttaaaagttttctcattctagctacttca |
100 |
Q |
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| T |
15002615 |
acatttgcacctttgctccttctcccactcctatgtatctacaaaatacacagccataattggctaattagttaaaagttttctcattctagctacttca |
15002714 |
T |
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| Q |
101 |
ctaataatttgtgttttaggatatatattaaaattaatttatct |
144 |
Q |
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| T |
15002715 |
ctaataatttatgttttaggatatatattaaaattaatttatct |
15002758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 143 - 292
Target Start/End: Original strand, 15002799 - 15002948
Alignment:
| Q |
143 |
cttaaccgtcgaacatttttgaaagaattttatccaatttcacatactactattgtacatacagaaatcatgcccttgttaggtccgtttggtcggaggt |
242 |
Q |
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| T |
15002799 |
cttaaccgtggaacatttttgaaagaactttatccaatttcacatactactattgtacatacagaaatcatgcccttgttaggtccatttggtcggaggt |
15002898 |
T |
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| Q |
243 |
ttttatagaggaggggaaggaatatttttaatttgacatatttgattcaa |
292 |
Q |
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| T |
15002899 |
ttttagagaggaggggaaggaatatttttaatttgacatatttgattcaa |
15002948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 39949672 - 39949708
Alignment:
| Q |
256 |
gggaaggaatatttttaatttgacatatttgattcaa |
292 |
Q |
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| T |
39949672 |
gggaaggaatatttttaatttgacatgtttgattcaa |
39949708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 104949 - 104909
Alignment:
| Q |
252 |
ggaggggaaggaatatttttaatttgacatatttgattcaa |
292 |
Q |
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| T |
104949 |
ggagtggaaggaatatttttaatttgacatgtttggttcaa |
104909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 39576409 - 39576477
Alignment:
| Q |
224 |
ggtccgtttggtcggaggtttttatagaggaggggaaggaatatttttaatttgacatatttgattcaa |
292 |
Q |
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|||| ||||||| | |||||||| || |||||||||| |||||||||||||||| || |||| ||||| |
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| T |
39576409 |
ggtctgtttggttgaaggtttttgaaggggaggggaagtaatatttttaatttgatatgtttggttcaa |
39576477 |
T |
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