View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18716_high_1 (Length: 743)

Name: NF18716_high_1
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18716_high_1
NF18716_high_1
[»] chr1 (1 HSPs)
chr1 (1-727)||(52287963-52288687)


Alignment Details
Target: chr1 (Bit Score: 667; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 1 - 727
Target Start/End: Complemental strand, 52288687 - 52287963
Alignment:
Q  1 atactctatttactgcccacagattcctgtcttctttccaatctcttctgctaacatagataattgtagttcactgttaaatgaattttgttttaaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52288687 atactctatttactgcccacagattcctgtcttctttccaatctcttctgctaaaatagataattgtagttcactgttaaatgaattttgttttaaaaat 52288588  T
Q  101 atttaccttcttacaaggttaaccatcgagttctatatattcacttatagtatcttgtaagaaagaaatcaaataaatggctaggagtgcgaagtagcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52288587 atttaccttcttacaaggttaaccatcgagttctatatattcacttatagtatcttgtaagaaagaaatcaaataaatggctaggagtgcgaagcagcca 52288488  T
Q  201 actcggttgatgagctgagagagacgctgaagaagtactaaccaagagatccaaagttcaaaccctnnnnnnntaacatgcctactaatttattaaaatt 300  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||    
T  52288487 actcggtcgatgagctgagaga--cgctgaagaagtactaaccaagagatccaaagttcaaaccctaaaaaaataacatgcctacttatttattaaaatt 52288390  T
Q  301 tacctataacaaattatctctgcatcagaaattccttaatgaaactagttgatggaacttttgctaatgaaccattaacaaaagtattgtaaaattagca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52288389 tacctataacaaattatctctgcatcagaaattccttaatgaaactaattgatggaacttttgctaatgaaccattaacaaaagtattgtaaaattagca 52288290  T
Q  401 atgccaatgagaacaaacaaccacaaagtttatgtcctgtgggtcagtgcttctccccacaagaaaatcaatcaggttttaattttacattgtgatgctt 500  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52288289 atgccaatgagaacaaataaccacaaagtttatgtcctgtgggtcagtgcttctccccacaagaaaatcaatcaggttttaattttacattgtgatgctt 52288190  T
Q  501 gcagtgcagacaaactccttcaataatgaaaagataagaaattaaaaagcaatataattatgataccactaagtctagtttaccactttttaaatatagt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52288189 gcagtgcagacaaactccttcaataatgaaaagataagaaattaaaaagcaatataattatgataccactaagtctagtttactactttttaaatatagt 52288090  T
Q  601 acattagtacacactaccctttaaaaagtagcactactcttcattttttcatgataaaacctcagcaactaccattagtttctatcaaacataggaagaa 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52288089 acattagtacacactaccctttaaaaagtagcactactcttcattttttcatgataaaacctcagcaactaccattagtttctatcaaacataggaagaa 52287990  T
Q  701 ttctcaaaatacctgaaaggttaaaat 727  Q
    |||||||||||||||||||||||||||    
T  52287989 ttctcaaaatacctgaaaggttaaaat 52287963  T

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