View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18716_high_13 (Length: 261)

Name: NF18716_high_13
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18716_high_13
NF18716_high_13
[»] chr6 (44 HSPs)
chr6 (15-239)||(26802201-26802428)
chr6 (16-239)||(27725046-27725267)
chr6 (15-239)||(27228997-27229218)
chr6 (15-239)||(27604906-27605135)
chr6 (26-239)||(27698695-27698906)
chr6 (15-239)||(27718580-27718803)
chr6 (15-239)||(28786041-28786264)
chr6 (15-239)||(26655752-26655975)
chr6 (15-239)||(26761723-26761946)
chr6 (35-239)||(27611203-27611406)
chr6 (15-239)||(28780902-28781125)
chr6 (37-239)||(28792184-28792385)
chr6 (75-239)||(27338266-27338430)
chr6 (75-239)||(27399006-27399170)
chr6 (20-237)||(27427806-27428020)
chr6 (83-239)||(26622806-26622962)
chr6 (83-239)||(26728784-26728940)
chr6 (115-239)||(26884025-26884149)
chr6 (89-239)||(31284124-31284274)
chr6 (15-236)||(26823609-26823823)
chr6 (135-239)||(27531398-27531502)
chr6 (89-239)||(27593221-27593371)
chr6 (91-240)||(26861454-26861603)
chr6 (89-239)||(27677815-27677965)
chr6 (89-239)||(27678782-27678932)
chr6 (89-239)||(27706603-27706753)
chr6 (108-239)||(26646334-26646465)
chr6 (108-239)||(26752302-26752433)
chr6 (107-213)||(28098596-28098702)
chr6 (147-227)||(26048739-26048819)
chr6 (147-227)||(26069908-26069988)
chr6 (147-237)||(25579613-25579703)
chr6 (147-227)||(25481636-25481716)
chr6 (147-227)||(25538434-25538514)
chr6 (147-227)||(26055820-26055900)
chr6 (147-227)||(26075790-26075870)
chr6 (147-227)||(26142759-26142839)
chr6 (115-206)||(28325343-28325434)
chr6 (117-203)||(26342171-26342257)
chr6 (15-47)||(27338450-27338482)
chr6 (15-47)||(27399190-27399222)
chr6 (109-240)||(28185222-28185353)
chr6 (118-205)||(28226815-28226902)
chr6 (130-239)||(28234441-28234550)
[»] scaffold0349 (3 HSPs)
scaffold0349 (16-239)||(3623-3844)
scaffold0349 (26-239)||(14556-14767)
scaffold0349 (15-180)||(8061-8225)
[»] scaffold0277 (2 HSPs)
scaffold0277 (15-239)||(13833-14056)
scaffold0277 (15-239)||(4872-5100)
[»] chr4 (7 HSPs)
chr4 (17-239)||(18699588-18699807)
chr4 (15-239)||(18655665-18655886)
chr4 (15-239)||(18731692-18731913)
chr4 (15-239)||(18679755-18679976)
chr4 (83-239)||(18724273-18724429)
chr4 (20-237)||(17989240-17989454)
chr4 (20-237)||(18073535-18073749)
[»] scaffold1254 (1 HSPs)
scaffold1254 (15-239)||(118-334)
[»] scaffold0419 (1 HSPs)
scaffold0419 (15-239)||(7295-7511)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-237)||(59343-59557)
[»] chr8 (2 HSPs)
chr8 (89-239)||(29273971-29274121)
chr8 (129-236)||(31903727-31903834)
[»] chr1 (3 HSPs)
chr1 (69-227)||(28164562-28164720)
chr1 (115-239)||(28127868-28127992)
chr1 (89-239)||(268545-268695)
[»] scaffold0019 (1 HSPs)
scaffold0019 (115-240)||(58482-58607)
[»] scaffold0038 (3 HSPs)
scaffold0038 (115-206)||(116658-116749)
scaffold0038 (118-205)||(27313-27400)
scaffold0038 (130-239)||(34602-34711)
[»] chr2 (1 HSPs)
chr2 (127-203)||(3279562-3279638)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 44)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 26802201 - 26802428
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnn---catccaatttctcacaattttcatggctatgcagtctccttcc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  26802201 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttttttcatccaatttctcacaattttcatggctatgcagtctccttcc 26802300  T
Q  112 tcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26802301 tcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctc 26802400  T
Q  212 ttattgacaagggaatccataccttcat 239  Q
    ||||||||||||||||||||||||||||    
T  26802401 ttattgacaagggaatccataccttcat 26802428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 27725267 - 27725046
Alignment:
Q  16 acagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcat 115  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || ||||||||||    
T  27725267 acagaccacaaaaatttac-cattcatattctgcattctcaaactctttttt-catcctatttctctcaattgtcatggctatacaatcaccttcctcat 27725170  T
Q  116 cctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttat 215  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||     
T  27725169 cctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttac 27725070  T
Q  216 tgacaagggaatccataccttcat 239  Q
    ||||||||||||||||||||||||    
T  27725069 tgacaagggaatccataccttcat 27725046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 27228997 - 27229218
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||       ||||||||||||| ||| | |||||||||| || || ||||||||     
T  27228997 cacataccacaaaaacatactcattcatattctgcattctaaaactctttt---catccaatttctctcaagtctcatggctatacaatcaccttcctct 27229093  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27229094 tcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctctta 27229193  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     ||||||||||||||||||||||||    
T  27229194 ctgacaagggaatccataccttcat 27229218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 27605135 - 27604906
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||| ||||||||||||| |  |||||||||    
T  27605135 cacagaccacaaaaacttactcattcatattctgcattctcaaactctttttt-catccaatttctctcaattctcatggctatgcaattaccttcctca 27605037  T
Q  115 tcctc------ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaagg 208  Q
    |||||      ||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  27605036 tcctcatcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaagg 27604937  T
Q  209 ctcttattgacaagggaatccataccttcat 239  Q
    |||||| |||||||||||| |||||||||||    
T  27604936 ctcttactgacaagggaattcataccttcat 27604906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 27698906 - 27698695
Alignment:
Q  26 aaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcatt 125  Q
    |||| |||||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||||| |||||||    
T  27698906 aaaatttactcattcatattctgcattctcaaactcttttt--catcctatttctctcaattctcatggctatacaatcaccttcctcatccacttcatt 27698809  T
Q  126 ttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaaggga 225  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||    
T  27698808 ttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaaggga 27698709  T
Q  226 atccataccttcat 239  Q
    ||||||||||||||    
T  27698708 atccataccttcat 27698695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 27718803 - 27718580
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||    
T  27718803 cacagaacacaaaaattcactcattcatattctgcattctcaaactctttttt-catcctatttctctcaattctcatggctatacaatcaccttcctca 27718705  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||||    
T  27718704 tcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctctta 27718605  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     ||||||||||||||||||||||||    
T  27718604 ctgacaagggaatccataccttcat 27718580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 28786041 - 28786264
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||       ||||||||||||| ||||| | |||||||| || || |||||||||    
T  28786041 cacagaccacaaaaacaaactcattcatattctgaattctcaaactctttttt-catccaatttctctcaattcttatggctatacaatcaccttcctca 28786139  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || |||||||||||||||||||    
T  28786140 tcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctctta 28786239  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     ||||||||||||| | ||||||||    
T  28786240 ctgacaagggaatcaaaaccttcat 28786264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 26655752 - 26655975
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||       |||||| |||||| ||||| |||||||||| || || |||||||||    
T  26655752 cacagaccacaaaaacttactcattcatattctgcattcccaaactctttttt-catccattttctctcaattctcatggctatacaatcaccttcctca 26655850  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| ||||| || |  |||||||||||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||    
T  26655851 tcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctctta 26655950  T
Q  215 ttgacaagggaatccataccttcat 239  Q
    |||| |||||||||||||| |||||    
T  26655951 ttgataagggaatccatactttcat 26655975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 26761723 - 26761946
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||       |||||| |||||| ||||| |||||||||| || || |||||||||    
T  26761723 cacagaccacaaaaacttactcattcatattctgcattcccaaactctttttt-catccattttctctcaattctcatggctatacaatcaccttcctca 26761821  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| ||||| || |  |||||||||||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||    
T  26761822 tcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctctta 26761921  T
Q  215 ttgacaagggaatccataccttcat 239  Q
    |||| |||||||||||||| |||||    
T  26761922 ttgataagggaatccatactttcat 26761946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 27611406 - 27611203
Alignment:
Q  35 tcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatgg 134  Q
    |||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||| |   ||||||| || ||||||||||| |||||    
T  27611406 tcattcatattctgcattctcaaactctttttt-catccaatttctctcaattttcatggctatgcaattagcttcctcttcttcttcattttcctatgg 27611308  T
Q  135 attcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacc 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  27611307 attcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatccatacc 27611208  T
Q  235 ttcat 239  Q
    |||||    
T  27611207 ttcat 27611203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 28780902 - 28781125
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||       ||||||||||||| ||||| ||||||||||||| |  ||||||||     
T  28780902 cacagaccacaaaaacaaactcattcatattctgaattctcaaactctttttt-catccaatttctctcaattatcatggctatgcaattaccttcctct 28781000  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  28781001 tcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 28781100  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     ||||||||||||| | ||||||||    
T  28781101 ctgacaagggaatcaaaaccttcat 28781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 28792184 - 28792385
Alignment:
Q  37 attcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggat 136  Q
    |||||||||||| ||||||||||||       ||||||||||||| ||||| | |||||||| || || ||||||||||||||||||||||| |||||||    
T  28792184 attcatattctgaattctcaaactctttttt-catccaatttctctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggat 28792282  T
Q  137 tcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacctt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||| ||||||||||||| | |||||    
T  28792283 tcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaacctt 28792382  T
Q  237 cat 239  Q
    |||    
T  28792383 cat 28792385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 27338430 - 27338266
Alignment:
Q  75 atttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgac 174  Q
    ||||||| ||||| ||||||||||||| || | |||||| ||||||||| |||| | ||| ||||  ||||| ||||||||||||||||||| || ||||    
T  27338430 atttctctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgac 27338331  T
Q  175 actcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
    ||||  ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||    
T  27338330 actctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcat 27338266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 27399170 - 27399006
Alignment:
Q  75 atttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgac 174  Q
    ||||||| ||||| ||||||||||||| || | |||||| ||||||||| |||| | ||| ||||  ||||| ||||||||||||||||||| || ||||    
T  27399170 atttctctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgac 27399071  T
Q  175 actcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
    ||||  ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||    
T  27399070 actctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcat 27399006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 27428020 - 27427806
Alignment:
Q  20 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 119  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  27428020 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 27427924  T
Q  120 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 219  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  27427923 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 27427824  T
Q  220 aagggaatccataccttc 237  Q
    |||||||| | |||||||    
T  27427823 aagggaattcgtaccttc 27427806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 26622806 - 26622962
Alignment:
Q  83 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 182  Q
    ||||| ||||||||||||| || || ||||| ||||||||| |||| |||  |||||  |||||||||||||| ||||| || |||| ||||||||||||    
T  26622806 caattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggta 26622905  T
Q  183 cggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
    |||||| || || ||||||||||||||||||| ||||||||||||||| ||||||||    
T  26622906 cggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcat 26622962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 26728784 - 26728940
Alignment:
Q  83 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 182  Q
    ||||| ||||||||||||| || || ||||| ||||||||| |||| |||  |||||  |||||||||||||| ||||| || |||| ||||||||||||    
T  26728784 caattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggta 26728883  T
Q  183 cggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
    |||||| || || ||||||||||||||||||| ||||||||||||||| ||||||||    
T  26728884 cggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcat 26728940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 26884025 - 26884149
Alignment:
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| || || | |||||||||||| ||||| || || |||||||||||||||||||    
T  26884025 tcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctctta 26884124  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     | ||||||||||||| ||||||||    
T  26884125 ctaacaagggaatccacaccttcat 26884149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 239
Target Start/End: Original strand, 31284124 - 31284274
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| ||  ||||||| ||||||||| |||| |||| |||||  |||||||| ||||| ||||| ||||| | |||||||||||| |||||    
T  31284124 tcatggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaataccaagtattccttagtttcaggggaagtgacactcggtatggttt 31284223  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
     || |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  31284224 caccggcaatctctacaaggctcttactgacaagggaatccacaccttcat 31284274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 26823609 - 26823823
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||| ||||||  ||| ||||||||||||||||||||||||||||||       | ||||||||||| ||||| ||||||||||||||||  |||||||     
T  26823609 cacacaccacagtaacatactcattcatattctgcattctcaaactctttctt-cgtccaatttctctcaattctcatggctatgcagtcaacttcctc- 26823706  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
         |||| |||| ||||  ||||  ||||||||||| ||||||||||| ||| ||||||||||||| |  ||||| ||||||||||||||||||||||    
T  26823707 -----ttcagtttcatatgatttcaaataccaagtgtttctcagttttagaggcgctgacactcggtatgaatttaccggcaatctctacaaggctctta 26823801  T
Q  215 ttgacaagggaatccatacctt 236  Q
      |||||||||||||| |||||    
T  26823802 cagacaagggaatccacacctt 26823823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 27531502 - 27531398
Alignment:
Q  135 attcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacc 234  Q
    |||||||||||||||||||||||||||||||||| | ||||||||  |||||||||| || ||||||||||||||||||| ||||||||||||| |||||    
T  27531502 attcacttaccaagtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctatacc 27531403  T
Q  235 ttcat 239  Q
    |||||    
T  27531402 ttcat 27531398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 27593371 - 27593221
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||||||| ||| ||||| |||| ||||  | ||  |||||||| ||||||||||| || || | ||||||||||||||||||    
T  27593371 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 27593272  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
     || |||||||||||||||||||||| ||||||||||||| | ||||||||    
T  27593271 caccggcaatctctacaaggctcttactgacaagggaatcaacaccttcat 27593221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 26861454 - 26861603
Alignment:
Q  91 atggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggtttta 190  Q
    ||||||||||| || |||| ||| ||||||||  |||| ||||||||||  ||||| || ||||||||||| || || | |||||||||||| |||||||    
T  26861454 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggtttta 26861553  T
Q  191 cgggcaatctctacaaggctcttattgacaagggaatccataccttcatg 240  Q
    | || ||||||||||||||||||| |||||||||||| || |||||||||    
T  26861554 ccggtaatctctacaaggctcttactgacaagggaattcacaccttcatg 26861603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 27677965 - 27677815
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||||||| ||| ||||| |||| ||||  | ||  |||||||| ||||||| ||| || || | ||||||||||||||||||    
T  27677965 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcggtacggttt 27677866  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
     || |||||||||||||||||||||  ||||||||||||||| ||||||||    
T  27677865 caccggcaatctctacaaggctcttgatgacaagggaatccacaccttcat 27677815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 239
Target Start/End: Original strand, 27678782 - 27678932
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||||||| ||| ||||| |||| ||||  | ||  |||||||| ||||||||||| || || | ||||||||||||||||||    
T  27678782 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 27678881  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
     || || ||||||||||||||||||| ||||||||||||| | ||||||||    
T  27678882 caccgggaatctctacaaggctcttactgacaagggaatcaacaccttcat 27678932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 27706753 - 27706603
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||| ||| ||| ||||| |||| ||||  | ||  |||||||| ||||||||||| || ||   ||||||||||||||||||    
T  27706753 tcatggctatgcaatcacctttctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaggtgacactcggtacggttt 27706654  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
     || |||||||||||||||||| ||  ||||||||||||||| ||||||||    
T  27706653 cacaggcaatctctacaaggcttttgatgacaagggaatccacaccttcat 27706603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 26646334 - 26646465
Alignment:
Q  108 ttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaag 207  Q
    |||||| ||||||| | |||| || |||||||| ||||| || |||||||  || ||||||| |||||||||  |||||||||| ||  |||||||||||    
T  26646334 ttcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaag 26646433  T
Q  208 gctcttattgacaagggaatccataccttcat 239  Q
    ||||||| |||||||||||| || ||||||||    
T  26646434 gctcttactgacaagggaattcacaccttcat 26646465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 26752302 - 26752433
Alignment:
Q  108 ttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaag 207  Q
    |||||| ||||||| | |||| || |||||||| ||||| || |||||||  || ||||||| |||||||||  |||||||||| ||  |||||||||||    
T  26752302 ttcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaag 26752401  T
Q  208 gctcttattgacaagggaatccataccttcat 239  Q
    ||||||| |||||||||||| || ||||||||    
T  26752402 gctcttactgacaagggaattcacaccttcat 26752433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 28098702 - 28098596
Alignment:
Q  107 cttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaa 206  Q
    ||||||| | ||||||||| |||||||||||||| ||  | ||||| || | |||||||||||| ||||||||||| |||||||| || |||||||||||    
T  28098702 cttcctctttctcttcattctcttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggtatggttttactggaaatctctacaa 28098603  T
Q  207 ggctctt 213  Q
     ||||||    
T  28098602 agctctt 28098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 26048739 - 26048819
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaat 227  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||| ||||||||||||||    
T  26048739 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaat 26048819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 26069908 - 26069988
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaat 227  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||| ||||||||||||||    
T  26069908 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaat 26069988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 25579613 - 25579703
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttc 237  Q
    ||||||||||||||| || |||| |||||||||  ||  |||||| || |||||||| ||||||||| ||||||||||||| | |||||||    
T  25579613 agtgttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttc 25579703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 25481636 - 25481716
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaat 227  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||| |||||||||||||    
T  25481636 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaat 25481716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 25538434 - 25538514
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaat 227  Q
    ||||||||||||||| ||||||| |||||||||  ||   ||||| || |||||||| ||||||||| |||||||||||||    
T  25538434 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaat 25538514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 26055820 - 26055900
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaat 227  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||| |||||||||||||    
T  26055820 agtgttcctcattttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaat 26055900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 26075790 - 26075870
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaat 227  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||| |||||||||||||    
T  26075790 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaat 26075870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 26142759 - 26142839
Alignment:
Q  147 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaat 227  Q
    ||||||||||||||| ||||||| |||||||||  ||   ||||| || |||||||| ||||||||| |||||||||||||    
T  26142759 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaat 26142839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 28325343 - 28325434
Alignment:
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaa 206  Q
    |||||||| ||||| ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || |||||||||||    
T  28325343 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaa 28325434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 26342257 - 26342171
Alignment:
Q  117 ctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctcta 203  Q
    ||||||||| || ||||||||||| ||  | |||||||||| ||||||||||| || |||||| || |||||||| |||||| ||||    
T  26342257 ctcttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggttttactggcaatatcta 26342171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 27338482 - 27338450
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattct 47  Q
    |||||||||||||||||||||||||||||||||    
T  27338482 cacagaccacaaaaacttactcattcatattct 27338450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 27399222 - 27399190
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattct 47  Q
    |||||||||||||||||||||||||||||||||    
T  27399222 cacagaccacaaaaacttactcattcatattct 27399190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 28185222 - 28185353
Alignment:
Q  109 tcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaagg 208  Q
    |||||||||||||| || || ||||||||||| ||  | |||||||| || ||||| || | ||||||||| ||  ||||||| || |||||| | |  |    
T  28185222 tcctcatcctcttccttctcctatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgttttactggaaatctcaatagag 28185321  T
Q  209 ctcttattgacaagggaatccataccttcatg 240  Q
    |||||  ||||||||||||||  |||||||||    
T  28185322 ctctttgtgacaagggaatccgaaccttcatg 28185353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 28226815 - 28226902
Alignment:
Q  118 tcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctaca 205  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || ||||||||||    
T  28226815 tcttccttctcttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctaca 28226902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 28234441 - 28234550
Alignment:
Q  130 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatcc 229  Q
    ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| |  |||||||| |  ||||||  | ||||||||||||    
T  28234441 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatcc 28234540  T
Q  230 ataccttcat 239  Q
    | ||||||||    
T  28234541 acaccttcat 28234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 3844 - 3623
Alignment:
Q  16 acagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcat 115  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || ||||||||||    
T  3844 acagaccacaaaaatttac-cattcatattctgcattctcaaactctttttt-catcctatttctctcaattgtcatggctatacaatcaccttcctcat 3747  T
Q  116 cctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttat 215  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||     
T  3746 cctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttac 3647  T
Q  216 tgacaagggaatccataccttcat 239  Q
    ||||||||||||||||||||||||    
T  3646 tgacaagggaatccataccttcat 3623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 14767 - 14556
Alignment:
Q  26 aaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcatt 125  Q
    |||| |||||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||||| |||||||    
T  14767 aaaatttactcattcatattctgcattctcaaactcttttt--catcctatttctctcaattctcatggctatacaatcaccttcctcatccacttcatt 14670  T
Q  126 ttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaaggga 225  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||    
T  14669 ttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaaggga 14570  T
Q  226 atccataccttcat 239  Q
    ||||||||||||||    
T  14569 atccataccttcat 14556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 8225 - 8061
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||    
T  8225 cacagaacacaaaaattcactcattcatattctgcattctcaaactctttttt-catcctatttctctcaattctcatggctatacaatcaccttcctca 8127  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcgg 180  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8126 tcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcgg 8061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 14056 - 13833
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||       ||||||||||||| ||||| ||||||||||||| |  ||||||||     
T  14056 cacagaccacaaaaacaaactcattcatattctgaattctcaaactctttttt-catccaatttctctcaattatcatggctatgcaattaccttcctct 13958  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  13957 tcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 13858  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     ||||||||||||| | ||||||||    
T  13857 ctgacaagggaatcaaaaccttcat 13833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 5100 - 4872
Alignment:
Q  15 cacagaccacaaaaacttactcatt-----catattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctcctt 109  Q
    ||||||||||||||||||| |||||     ||||||||| ||||||||||||       ||||||||||||| ||||| | |||||||| || || ||||    
T  5100 cacagaccacaaaaacttattcattaaattcatattctgaattctcaaactctttttt-catccaatttctctcaattcttatggctatacaatcacctt 5002  T
Q  110 cctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggc 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||| || ||||||||||||||    
T  5001 cctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggc 4902  T
Q  210 tcttattgacaagggaatccataccttcat 239  Q
    ||||| ||||||||||||| | ||||||||    
T  4901 tcttactgacaagggaatcaaaaccttcat 4872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 18699807 - 18699588
Alignment:
Q  17 cagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatc 116  Q
    |||||||||||||||||  |  |||||||||||||||||||||||       |||| | |||||| ||||| ||||||||||||| || |||||||||||    
T  18699807 cagaccacaaaaacttaacc--tcatattctgcattctcaaactctttttt-catctagtttctctcaattctcatggctatgcaatcaccttcctcatc 18699711  T
Q  117 ctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttatt 216  Q
    |||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||||||  |||||||||| ||| |||||||||| ||||||| |    
T  18699710 ctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcgtgacggttttactggccatctctacaaagctcttact 18699611  T
Q  217 gacaagggaatccataccttcat 239  Q
    |||||||||||||| ||||||||    
T  18699610 gacaagggaatccacaccttcat 18699588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 18655886 - 18655665
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||       |||||| |||||| ||||||||||||||| ||| || |||||||||    
T  18655886 cacataccacaaaaacttaaac--tcatattctgcattctcaaactctttttt-catccagtttctctcaattttcatggctaggcaatcaccttcctca 18655790  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |||||||||| ||  |||||||||| |||||||    
T  18655789 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagctctta 18655690  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     ||||||||||||||| ||||||||    
T  18655689 ctgacaagggaatccacaccttcat 18655665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 18731913 - 18731692
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||       |||||| |||||| | ||||||||||||||||| || |||||||||    
T  18731913 cacataccacaaaaacttaaac--tcatattctgcattctcaaactctttttt-catccagtttctctcgattttcatggctatgcaatcaccttcctca 18731817  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |||||||||| ||| |||||||||  |||||||    
T  18731816 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggttttactggccatctctacagagctctta 18731717  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     ||||||||||||||| ||||||||    
T  18731716 ctgacaagggaatccacaccttcat 18731692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 18679976 - 18679755
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||       |||||| |||||| | ||||||||||||||||| || |||||||||    
T  18679976 cacataccacaaaaacttaaac--tcatattctgcattctcaaactctttttt-catccagtttctctctattttcatggctatgcaatcaccttcctca 18679880  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    | |||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |||||||||| ||  ||||||||||||||||||    
T  18679879 ttctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctctta 18679780  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     |||||| |||||||| ||||||||    
T  18679779 ctgacaaaggaatccacaccttcat 18679755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 18724429 - 18724273
Alignment:
Q  83 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 182  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |    
T  18724429 caattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaa 18724330  T
Q  183 cggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
    ||||||||| ||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  18724329 cggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttcat 18724273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 17989454 - 17989240
Alignment:
Q  20 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 119  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  17989454 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 17989358  T
Q  120 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 219  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  17989357 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 17989258  T
Q  220 aagggaatccataccttc 237  Q
    |||||||| | |||||||    
T  17989257 aagggaattcgtaccttc 17989240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 18073535 - 18073749
Alignment:
Q  20 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 119  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  18073535 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 18073631  T
Q  120 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 219  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  18073632 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 18073731  T
Q  220 aagggaatccataccttc 237  Q
    |||||||| | |||||||    
T  18073732 aagggaattcgtaccttc 18073749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 334 - 118
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||||||||||||||||||||||||||||||||       |||||||       |||| |||||||| ||||| ||||||||||||| || ||| ||||     
T  334 cacagaccacaaaaacttactcattcatattct-------caaactctttttt-catctaatttctctcaattctcatggctatgcaatcacctccctct 243  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  242 tcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 143  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     ||||||||||||| | ||||||||    
T  142 ctgacaagggaatcaaaaccttcat 118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 7295 - 7511
Alignment:
Q  15 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 114  Q
    |||||||||||||||||||||||||||||||||       |||||||       |||| |||||||| ||||| ||||||||||||| || ||| ||||     
T  7295 cacagaccacaaaaacttactcattcatattct-------caaactctttttt-catctaatttctctcaattctcatggctatgcaatcacctccctct 7386  T
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  7387 tcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 7486  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     ||||||||||||| | ||||||||    
T  7487 ctgacaagggaatcaaaaccttcat 7511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 59343 - 59557
Alignment:
Q  20 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 119  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  59343 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 59439  T
Q  120 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 219  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  59440 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 59539  T
Q  220 aagggaatccataccttc 237  Q
    |||||||| | |||||||    
T  59540 aagggaattcgtaccttc 59557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 29274121 - 29273971
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||||||| ||||||||| | || ||||||||||||||||| || |||||||  ||||| |||  |||||||||  |||||||    
T  29274121 tcatggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggttt 29274022  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
    ||  ||| ||||||||||| |||||| ||||||||||||||| ||||||||    
T  29274021 tattggccatctctacaagactcttactgacaagggaatccacaccttcat 29273971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 31903727 - 31903834
Alignment:
Q  129 ttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatc 228  Q
    |||||||||||| ||| | ||||||||||| ||||| |||   |||||||| || |||||||| || ||||||||||| ||||||  ||| |||||||||    
T  31903727 ttatggattcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctctacaaagctctttatgataagggaatc 31903826  T
Q  229 catacctt 236  Q
    || |||||    
T  31903827 cacacctt 31903834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 28164720 - 28164562
Alignment:
Q  69 catccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggc 168  Q
    ||||||||||||  ||||| |||||||||| |  || | |||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  28164720 catccaatttctgtcaattctcatggctatacgatcgcattcctcttcctcttcaatttcctatggattcacataccaagtgttcctcagttttaggggc 28164621  T
Q  169 actgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaat 227  Q
    | |||||||||  ||||||| || ||| ||||||| ||||| |||   |||||||||||    
T  28164620 agtgacactcgtgacggtttcactggccatctctataaggcccttgacgacaagggaat 28164562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 28127992 - 28127868
Alignment:
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||| || ||||||| |||||||||  ||||||| || ||| ||||||||||||| |||     
T  28127992 tcctcttcaatttcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggcccttt 28127893  T
Q  215 ttgacaagggaatccataccttcat 239  Q
     ||||||||||||||| || |||||    
T  28127892 atgacaagggaatccacacattcat 28127868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 268695 - 268545
Alignment:
Q  89 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 188  Q
    ||||||||||||| || |||||||| ||||||||| | || ||||||||  | ||||| || |||||||  || || |||  |||||||||  | |||||    
T  268695 tcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtgacactcgtgagggttt 268596  T
Q  189 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcat 239  Q
    ||  ||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  268595 tattggccatctctacaaggctcttactgacaagggaatccacaccttcat 268545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 58607 - 58482
Alignment:
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 214  Q
    |||||||| || || ||||||||||| || || |||||||| || ||||| ||   ||||||||| || |||||||| || ||||||||||  ||||||     
T  58607 tcctcttccttctcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctcttt 58508  T
Q  215 ttgacaagggaatccataccttcatg 240  Q
     ||||||||||||||  |||||||||    
T  58507 gtgacaagggaatccgaaccttcatg 58482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 116658 - 116749
Alignment:
Q  115 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaa 206  Q
    |||||||| ||||| ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || |||||||||||    
T  116658 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaa 116749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 27313 - 27400
Alignment:
Q  118 tcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctaca 205  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || ||||||||||    
T  27313 tcttccttctcttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctaca 27400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 34602 - 34711
Alignment:
Q  130 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatcc 229  Q
    ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| |  |||||||| |  ||||||  | ||||||||||||    
T  34602 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatcc 34701  T
Q  230 ataccttcat 239  Q
    | ||||||||    
T  34702 acaccttcat 34711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 3279562 - 3279638
Alignment:
Q  127 tcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctcta 203  Q
    |||||||||||||| ||  | || ||| | ||||||||||||||||||||||| || |||||||| || ||||||||    
T  3279562 tcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctcta 3279638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University