View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18716_high_19 (Length: 228)

Name: NF18716_high_19
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18716_high_19
NF18716_high_19
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-112)||(13872-13983)
scaffold0277 (1-110)||(4911-5020)
[»] chr6 (30 HSPs)
chr6 (1-112)||(26802278-26802389)
chr6 (1-112)||(28780975-28781086)
chr6 (1-114)||(27229066-27229179)
chr6 (1-112)||(27725085-27725196)
chr6 (1-86)||(27604945-27605030)
chr6 (1-114)||(27698734-27698847)
chr6 (1-110)||(28786116-28786225)
chr6 (1-110)||(28792237-28792346)
chr6 (1-117)||(31284119-31284235)
chr6 (1-112)||(27611242-27611353)
chr6 (1-114)||(27718619-27718732)
chr6 (1-117)||(27706642-27706758)
chr6 (13-112)||(26622812-26622911)
chr6 (13-112)||(26728790-26728889)
chr6 (1-114)||(26655823-26655936)
chr6 (1-114)||(26761794-26761907)
chr6 (1-114)||(27338305-27338418)
chr6 (1-114)||(27399045-27399158)
chr6 (1-114)||(27593260-27593373)
chr6 (13-117)||(27678777-27678881)
chr6 (1-110)||(26861454-26861563)
chr6 (1-114)||(27427843-27427956)
chr6 (1-114)||(27677854-27677967)
chr6 (13-88)||(26884023-26884098)
chr6 (159-213)||(26888139-26888193)
chr6 (159-202)||(26888291-26888334)
chr6 (155-197)||(26888563-26888605)
chr6 (33-67)||(27531469-27531503)
chr6 (10-90)||(26646337-26646417)
chr6 (10-90)||(26752305-26752385)
[»] scaffold1254 (1 HSPs)
scaffold1254 (1-114)||(157-270)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-114)||(7359-7472)
[»] scaffold0349 (3 HSPs)
scaffold0349 (1-112)||(3662-3773)
scaffold0349 (1-114)||(14595-14708)
scaffold0349 (21-114)||(8061-8154)
[»] chr4 (9 HSPs)
chr4 (10-114)||(18724321-18724425)
chr4 (1-112)||(18731731-18731842)
chr4 (1-114)||(18699627-18699740)
chr4 (10-112)||(18655713-18655815)
chr4 (10-112)||(18679803-18679905)
chr4 (1-114)||(17989277-17989390)
chr4 (1-114)||(18073599-18073712)
chr4 (156-202)||(18682966-18683012)
chr4 (157-202)||(18692281-18692326)
[»] chr1 (3 HSPs)
chr1 (13-90)||(28164601-28164678)
chr1 (13-87)||(28127919-28127993)
chr1 (76-114)||(268659-268697)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-114)||(59407-59520)
[»] chr8 (1 HSPs)
chr8 (11-116)||(29274020-29274125)


Alignment Details
Target: scaffold0277 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 13872 - 13983
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| ||||||||||  ||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||||  ||    
T  13872 agattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaatt 13971  T
Q  101 gcatagccatga 112  Q
    ||||||||||||    
T  13972 gcatagccatga 13983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 4911 - 5020
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    ||||| || ||||||||||  ||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||| |||||| ||    
T  4911 agatttccggtaaaaccgtggcgagtgtcaatgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgatt 5010  T
Q  101 gcatagccat 110  Q
    | ||||||||    
T  5011 gtatagccat 5020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 26802389 - 26802278
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| |||| |||| ||||||||| ||| |||| |  |    
T  26802389 agattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggatgaggaaggagact 26802290  T
Q  101 gcatagccatga 112  Q
    ||||||||||||    
T  26802289 gcatagccatga 26802278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28781086 - 28780975
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| ||||||||||  ||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||||  ||    
T  28781086 agattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaatt 28780987  T
Q  101 gcatagccatga 112  Q
    ||||||||||||    
T  28780986 gcatagccatga 28780975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 27229179 - 27229066
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| |||||||||| |||| ||||| ||||||||||||| || |||||||||||||||||| || |||||| ||||||||||||| |||||| ||    
T  27229179 agattgccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgatt 27229080  T
Q  101 gcatagccatgaga 114  Q
    | ||||||||||||    
T  27229079 gtatagccatgaga 27229066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 27725085 - 27725196
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    ||||| || |||||||||| |||| ||||| ||||||||||||| || |||||||||||||||||| ||||||||| ||||||||| ||| |||||| ||    
T  27725085 agatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgatt 27725184  T
Q  101 gcatagccatga 112  Q
    | ||||||||||    
T  27725185 gtatagccatga 27725196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 27604945 - 27605030
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagagga 86  Q
    |||||||| ||||||||||| ||| ||||| ||||||||||||| || |||||||||||||||||||||||||||| |||||||||    
T  27604945 agattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 27605030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27698734 - 27698847
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    ||||| || |||||||||| |||| ||||| |||||||||||||||  |||||||||||||||||| ||||||||| ||||| ||| ||| |||||| ||    
T  27698734 agatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgatt 27698833  T
Q  101 gcatagccatgaga 114  Q
    | ||||||||||||    
T  27698834 gtatagccatgaga 27698847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 28786225 - 28786116
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    ||||| || ||||||||||  ||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||| |||||| ||    
T  28786225 agatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgatt 28786126  T
Q  101 gcatagccat 110  Q
    | ||||||||    
T  28786125 gtatagccat 28786116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 28792346 - 28792237
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    ||||| || ||||||||||  ||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||| |||||| ||    
T  28792346 agatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgatt 28792247  T
Q  101 gcatagccat 110  Q
    | ||||||||    
T  28792246 gtatagccat 28792237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 31284235 - 31284119
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| || ||||| |||||| ||||||| ||||| ||||| || || ||||||||  ||||| ||||||||||||||||||||||| ||| || ||    
T  31284235 agattgccggtgaaaccataccgagtgtcacttcccctgaaactaaggaatacttggtatttgaatacataggaaattgaagaggaagaggaagatgatt 31284136  T
Q  101 gcatagccatgagattt 117  Q
    |||||||||||||||||    
T  31284135 gcatagccatgagattt 31284119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 27611242 - 27611353
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    ||||| || ||||||||||  ||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||| ||| |  ||    
T  27611242 agatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaagaagaggaagctaatt 27611341  T
Q  101 gcatagccatga 112  Q
    ||||||||||||    
T  27611342 gcatagccatga 27611353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27718619 - 27718732
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    ||||| || ||||||| || |||| ||||| |||||||||||||||| |||||||||||||||||| ||| ||| | ||||||||| ||| |||||| ||    
T  27718619 agatttccggtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgatt 27718718  T
Q  101 gcatagccatgaga 114  Q
    | ||||||||||||    
T  27718719 gtatagccatgaga 27718732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 27706642 - 27706758
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| || |||||||||||| ||||||  || || |||||||| || ||||||||  || |  ||||||||||||||| |||||||||||||| ||    
T  27706642 agattgcctgtgaaaccgtaccgagtgtcacctcctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagagaaaggtgatt 27706741  T
Q  101 gcatagccatgagattt 117  Q
    |||||||||||||||||    
T  27706742 gcatagccatgagattt 27706758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 26622911 - 26622812
Alignment:
Q  13 aaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggttgcatagccatga 112  Q
    |||||||||||| |||||||||| || ||||| || |||||||||||  |||||  |||||||||||||||||||||| | |||| ||||||||||||||    
T  26622911 aaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatga 26622812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 26728889 - 26728790
Alignment:
Q  13 aaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggttgcatagccatga 112  Q
    |||||||||||| |||||||||| || ||||| || |||||||||||  |||||  |||||||||||||||||||||| | |||| ||||||||||||||    
T  26728889 aaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatga 26728790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 26655936 - 26655823
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| |||||||||| |||  ||||| |||||||||||||||| |||||||||||  | ||  ||||||||| ||||||||| ||| |||||| ||    
T  26655936 agattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgatt 26655837  T
Q  101 gcatagccatgaga 114  Q
    | ||||||||||||    
T  26655836 gtatagccatgaga 26655823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 26761907 - 26761794
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| |||||||||| |||  ||||| |||||||||||||||| |||||||||||  | ||  ||||||||| ||||||||| ||| |||||| ||    
T  26761907 agattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgatt 26761808  T
Q  101 gcatagccatgaga 114  Q
    | ||||||||||||    
T  26761807 gtatagccatgaga 26761794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27338305 - 27338418
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| |||||||||||  || ||||| || ||||||||||||| ||||| |||||  ||||  || |||||||||||||||||||| || ||| ||    
T  27338305 agattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgatt 27338404  T
Q  101 gcatagccatgaga 114  Q
    ||||||||||||||    
T  27338405 gcatagccatgaga 27338418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27399045 - 27399158
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| |||||||||||  || ||||| || ||||||||||||| ||||| |||||  ||||  || |||||||||||||||||||| || ||| ||    
T  27399045 agattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgatt 27399144  T
Q  101 gcatagccatgaga 114  Q
    ||||||||||||||    
T  27399145 gcatagccatgaga 27399158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27593260 - 27593373
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| || |||||||||||| ||||||| || || |||||||| || ||||||||  || |  ||||||||||||||| ||||||| |||||| ||    
T  27593260 agattgccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggtatttgtaatcataggaaattgaagtggaagaggaaggtgatt 27593359  T
Q  101 gcatagccatgaga 114  Q
    ||||||||||||||    
T  27593360 gcatagccatgaga 27593373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 27678881 - 27678777
Alignment:
Q  13 aaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggttgcatagccatga 112  Q
    |||||||||||| ||||||| || || |||||||| || ||||||||  || |  ||||||||||||||| ||||||| |||||| ||||||||||||||    
T  27678881 aaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatga 27678782  T
Q  113 gattt 117  Q
    |||||    
T  27678781 gattt 27678777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26861563 - 26861454
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    ||||| || |||||||| |||||| ||||||| || || |||||||| || || |||||  ||||| |||||||||| |||||||||||| |||||| ||    
T  26861563 agattaccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacctggtatttgaatccataggaaatggaagaggaagagcaaggtgatt 26861464  T
Q  101 gcatagccat 110  Q
    ||||||||||    
T  26861463 gcatagccat 26861454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27427843 - 27427956
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| || |||||||||||| ||||  ||||| || || |||| ||||| | |||| ||||||||||||||| |||||||||| ||||||||  ||    
T  27427843 agattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagaggaatagaaaggtaatt 27427942  T
Q  101 gcatagccatgaga 114  Q
    |||| |||||||||    
T  27427943 gcatggccatgaga 27427956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27677854 - 27677967
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| || |||||||||||| ||||||| || || ||| |||| || ||||||||  || |  ||||||||||||||| ||||||| |||||| ||    
T  27677854 agattgccggtgaaaccgtaccgagtgtcacttcctctgaaattgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgatt 27677953  T
Q  101 gcatagccatgaga 114  Q
    ||||||||||||||    
T  27677954 gcatagccatgaga 27677967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 26884098 - 26884023
Alignment:
Q  13 aaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaag 88  Q
    ||||| |||||| ||||||| || || |||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  26884098 aaaccataccgagtgtcacttcctctgaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggaag 26884023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 26888193 - 26888139
Alignment:
Q  159 ttcatctgattttgtctctctataaggattggtgaatataacattttcctctgtg 213  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||    
T  26888193 ttcatctgattttgactctctatatggattggtgaatatcacattctcctctgtg 26888139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 26888334 - 26888291
Alignment:
Q  159 ttcatctgattttgtctctctataaggattggtgaatataacat 202  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||    
T  26888334 ttcatttgattttgtctctctataaggattggtgaatatcacat 26888291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 26888605 - 26888563
Alignment:
Q  155 tatcttcatctgattttgtctctctataaggattggtgaatat 197  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  26888605 tatcttcatctgattttgtctctctacaaggactggtgaatat 26888563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 27531469 - 27531503
Alignment:
Q  33 gcccctaaaactgagtaacacttggtaagtgaatg 67  Q
    ||||||||||||||| |||||||||||||||||||    
T  27531469 gcccctaaaactgaggaacacttggtaagtgaatg 27531503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 26646417 - 26646337
Alignment:
Q  10 gtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagag 90  Q
    ||||||||||  ||| ||||||||||||| ||  |||| || || ||||| |||||| | ||||||||| |||||||||||    
T  26646417 gtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacctggtaggtgaatccgtaggaaattaaagaggaagag 26646337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 26752385 - 26752305
Alignment:
Q  10 gtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagag 90  Q
    ||||||||||  ||| ||||||||||||| ||  |||| || || ||||| |||||| | ||||||||| |||||||||||    
T  26752385 gtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacctggtaggtgaatccgtaggaaattaaagaggaagag 26752305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 157 - 270
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| ||||||||||  ||| ||||| ||||||||||||| || ||||||||||||||||||||||| |||| |||||||||||||  ||||| ||    
T  157 agattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgatt 256  T
Q  101 gcatagccatgaga 114  Q
    ||||||||||||||    
T  257 gcatagccatgaga 270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 7472 - 7359
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| ||||||||||  ||| ||||| ||||||||||||| || ||||||||||||||||||||||| |||| |||||||||||||  ||||| ||    
T  7472 agattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgatt 7373  T
Q  101 gcatagccatgaga 114  Q
    ||||||||||||||    
T  7372 gcatagccatgaga 7359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3662 - 3773
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    ||||| || |||||||||| |||| ||||| ||||||||||||| || |||||||||||||||||| ||||||||| ||||||||| ||| |||||| ||    
T  3662 agatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgatt 3761  T
Q  101 gcatagccatga 112  Q
    | ||||||||||    
T  3762 gtatagccatga 3773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14595 - 14708
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    ||||| || |||||||||| |||| ||||| |||||||||||||||  |||||||||||||||||| ||||||||| ||||| ||| ||| |||||| ||    
T  14595 agatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgatt 14694  T
Q  101 gcatagccatgaga 114  Q
    | ||||||||||||    
T  14695 gtatagccatgaga 14708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 8061 - 8154
Alignment:
Q  21 ccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggttgcatagccatgaga 114  Q
    |||| ||||| |||||||||||||||| |||||||||||||||||| ||| ||| | ||||||||| ||| |||||| ||| ||||||||||||    
T  8061 ccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgaga 8154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 18724321 - 18724425
Alignment:
Q  10 gtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggttgcatagcca 109  Q
    ||||||||||  ||| ||||||||||||| || ||||| ||||||||||||||||||  |||||||| ||||||||| ||| |||||| |||||||||||    
T  18724321 gtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagcca 18724420  T
Q  110 tgaga 114  Q
    |||||    
T  18724421 tgaga 18724425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 18731731 - 18731842
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||| ||| ||||||||||  ||| ||||||||||||| || ||||| ||||||||||||||||||  |||||||| ||||||||| ||| |||||| ||    
T  18731731 agatggccagtaaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgatt 18731830  T
Q  101 gcatagccatga 112  Q
    ||||||||||||    
T  18731831 gcatagccatga 18731842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 18699627 - 18699740
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||| ||| ||||||||||  ||| ||||| ||||||| || ||||| ||||||||||||||||||  |||||||| ||||||||| ||| |||||| ||    
T  18699627 agatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgatt 18699726  T
Q  101 gcatagccatgaga 114  Q
    ||||||||||||||    
T  18699727 gcatagccatgaga 18699740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 18655713 - 18655815
Alignment:
Q  10 gtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggttgcatagcca 109  Q
    ||||||||||  ||| ||||||||||||| || ||||| ||||||||||||||||||  |||||||| ||||||||| ||| |||||| |||| ||||||    
T  18655713 gtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcctagcca 18655812  T
Q  110 tga 112  Q
    |||    
T  18655813 tga 18655815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 18679803 - 18679905
Alignment:
Q  10 gtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggttgcatagcca 109  Q
    ||||||||||  ||| ||||||||||||| || ||||| ||||||||||||||||||  |||||||| ||||||| | ||| |||||| |||||||||||    
T  18679803 gtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagaatgaggaaggtgattgcatagcca 18679902  T
Q  110 tga 112  Q
    |||    
T  18679903 tga 18679905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 17989277 - 17989390
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| || |||||||||||| ||||  ||||| || || |||| ||||| | |||| ||||||||||||||| |||||||||| ||||||||  ||    
T  17989277 agattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagaggaatagaaaggtaatt 17989376  T
Q  101 gcatagccatgaga 114  Q
    |||| |||||||||    
T  17989377 gcatggccatgaga 17989390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 18073712 - 18073599
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| || |||||||||||| ||||  ||||| || || |||| ||||| | |||| ||||||||||||||| |||||||||| ||||||||  ||    
T  18073712 agattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagaggaatagaaaggtaatt 18073613  T
Q  101 gcatagccatgaga 114  Q
    |||| |||||||||    
T  18073612 gcatggccatgaga 18073599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 18682966 - 18683012
Alignment:
Q  156 atcttcatctgattttgtctctctataaggattggtgaatataacat 202  Q
    |||||||||||||||| ||| ||||||||||||| ||||||| ||||    
T  18682966 atcttcatctgattttctctttctataaggattgatgaatatcacat 18683012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 18692281 - 18692326
Alignment:
Q  157 tcttcatctgattttgtctctctataaggattggtgaatataacat 202  Q
    ||||||||||||||| ||| ||||||||||||| ||||||| ||||    
T  18692281 tcttcatctgattttctctttctataaggattgatgaatatcacat 18692326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 28164601 - 28164678
Alignment:
Q  13 aaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagag 90  Q
    |||||||  ||| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||    
T  28164601 aaaccgtcacgagtgtcactgcccctaaaactgaggaacacttggtatgtgaatccataggaaattgaagaggaagag 28164678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 28127919 - 28127993
Alignment:
Q  13 aaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaa 87  Q
    |||||||  ||| ||||||||||||| || ||||| ||||||||||| |||||| ||||||||||||||||||||    
T  28127919 aaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggtatgtgaatccataggaaattgaagaggaa 28127993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 268659 - 268697
Alignment:
Q  76 attgaagaggaagagaaaggtggttgcatagccatgaga 114  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  268659 attgaagaggaagaggaaggtgattgcatagccatgaga 268697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 59520 - 59407
Alignment:
Q  1 agattgcccgtaaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggtt 100  Q
    |||||||| || |||||||||||| ||||  ||||| || || |||| ||||| | |||| ||||||||||||||| |||||||||| ||||||||  ||    
T  59520 agattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagaggaatagaaaggtaatt 59421  T
Q  101 gcatagccatgaga 114  Q
    |||| |||||||||    
T  59420 gcatggccatgaga 59407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 29274020 - 29274125
Alignment:
Q  11 taaaaccgtaccgattgtcactgcccctaaaactgagtaacacttggtaagtgaatgcataggaaattgaagaggaagagaaaggtggttgcatagccat 110  Q
    |||||||||  ||| |||||| ||| |||||  |||| || || |||||||||||| |||| || ||||||||||||||| |||||| ||||||||||||    
T  29274020 taaaaccgtcacgagtgtcaccgcctctaaagttgaggaagacctggtaagtgaatccatatgagattgaagaggaagaggaaggtgattgcatagccat 29274119  T
Q  111 gagatt 116  Q
    ||||||    
T  29274120 gagatt 29274125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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