View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18716_high_2 (Length: 663)
Name: NF18716_high_2
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18716_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 39 - 646
Target Start/End: Original strand, 15276603 - 15277210
Alignment:
| Q |
39 |
atgtgtaatcctttttcgtgttgccctggagatctgagggnnnnnnnntt-gtttcagtcatgtttgcctaatattaagaattaaatatcttttgacaaa |
137 |
Q |
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| T |
15276603 |
atgtgtaatcctttttcgtgttgccctggagatctgaggaaaaaaaaatttgtttcagtcatgtttgcctaatattaagaattaaatatcttttgacaaa |
15276702 |
T |
|
| Q |
138 |
cctaatatgannnnnnnncttctacgggcctagtgatcaacaaatgcttaaataaacacacataagaaggagaaatatggtgattcaggtttgaacttgg |
237 |
Q |
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| T |
15276703 |
cctaatatgattttttttcttctacgggccaagtgatcaacaaatgcttaaataaacacacataagatggagaaatatggtgattcgggtttgaacctgg |
15276802 |
T |
|
| Q |
238 |
attctacgtaaacatcatcacaatcgaagcactaagttgtaacatcggaaactaatattaatattaagacctaatactgcctttttgtgtttattttgat |
337 |
Q |
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| T |
15276803 |
attttacgtaaacattatcacaatcgaagcactaagttgtaacatcggaaactaatattaatattaagacctaatactgcctttttgtgtttattttgat |
15276902 |
T |
|
| Q |
338 |
ttttacttcatttatcattcaggcaaaatgtgtttaacaatttattttacactatacaactattaatctattaatcannnnnnnngtttaacatattaat |
437 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15276903 |
ttttacttcatttatcattcaggcaaaatgtgtttaacaatttattttacactatacaactattaatctattaatca-tttttttgtttaacatattaat |
15277001 |
T |
|
| Q |
438 |
aaattacttattaattnnnnnnntatttgatcaaaattttgagttaattaattatttcgagtctagccattgttcgctcgatgtagttcgttttgaagtc |
537 |
Q |
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| T |
15277002 |
aaattacttattaattaaaaaaatatttgatcaaaattttgagttgattaattatttcgagtctagccattgttcgttcgatgtagttcgttttgaagtc |
15277101 |
T |
|
| Q |
538 |
tcattattctcattattgactaggtaattaagttgtatctctctctatgagaagcggctctctatccccgtgaaaagaaaaccctagtttttcacacaca |
637 |
Q |
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| T |
15277102 |
tcattattctcgttattgaccaggtaattaagttgtatctctctctatgagaagcgactctctatccccgtgaaaagaaaaccctagtttttcacacaca |
15277201 |
T |
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| Q |
638 |
gcaactcat |
646 |
Q |
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| T |
15277202 |
gcaactcat |
15277210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 556
Target Start/End: Complemental strand, 44874188 - 44874114
Alignment:
| Q |
485 |
ttaattatttcgagtctagccattgttcgctcgatgtagtt---cgttttgaagtctcattattctcattattga |
556 |
Q |
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|||||||||| |||||||||||||||||||||| | ||||| |||||| |||||| |||||||||||||||| |
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| T |
44874188 |
ttaattatttggagtctagccattgttcgctcgctctagttcaccgttttaaagtcttgttattctcattattga |
44874114 |
T |
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