View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18716_high_20 (Length: 210)

Name: NF18716_high_20
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18716_high_20
NF18716_high_20
[»] chr4 (3 HSPs)
chr4 (19-194)||(15481302-15481477)
chr4 (19-92)||(15481176-15481249)
chr4 (48-92)||(10421426-10421470)
[»] chr3 (2 HSPs)
chr3 (19-194)||(38337208-38337383)
chr3 (23-92)||(38337088-38337157)
[»] chr8 (2 HSPs)
chr8 (19-194)||(43924749-43924924)
chr8 (23-92)||(43924629-43924698)
[»] chr6 (2 HSPs)
chr6 (19-92)||(27763554-27763627)
chr6 (108-194)||(27763679-27763765)
[»] scaffold0189 (1 HSPs)
scaffold0189 (27-92)||(12335-12400)
[»] chr1 (1 HSPs)
chr1 (19-92)||(14924815-14924884)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 15481477 - 15481302
Alignment:
Q  19 atgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaattgttgaagcatggtaattgagtgcc 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15481477 atgcactgctacttcaactctctttcttcctctcattcttaccaccaccgcacaccactaggctgctgccggaattgttgaagcatggtaattgagtgcc 15481378  T
Q  119 atcactctgatcctcttatactcaacaccaaatataaatgaagatggtaattgagtgtctgttgattaaactatgt 194  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15481377 atcactctgttcctcttatactcaacaccagatataaatgaagatggtaattgagtgtctgttgattaaactatgt 15481302  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 15481176 - 15481249
Alignment:
Q  19 atgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 92  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||    
T  15481176 atgcactgctacttcaactctctttcttcctctcattttgaccaccaccacacaccactaggttgctgccggaa 15481249  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 10421470 - 10421426
Alignment:
Q  48 ctctcattctgacccccaccgcacaccactaggctgctgccggaa 92  Q
    ||||| |||||||| |||| |||||||||||||||||||||||||    
T  10421470 ctctctttctgaccaccactgcacaccactaggctgctgccggaa 10421426  T

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Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 38337383 - 38337208
Alignment:
Q  19 atgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaattgttgaagcatggtaattgagtgcc 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38337383 atgcactgctacttcaactctctttcttcctctcattctaaccaccaccgcacaccactaggctgctgccggaattgttgaagcatggtaattgagtgcc 38337284  T
Q  119 atcactctgatcctcttatactcaacaccaaatataaatgaagatggtaattgagtgtctgttgattaaactatgt 194  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38337283 atcactctgttcctcttatactcaacaccagatataaatgaagatggtaattgagtgtctgttgattaaactatgt 38337208  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 38337088 - 38337157
Alignment:
Q  23 actgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 92  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38337088 actgctacttcaactctctttcttcctctcattctgaccaccaccgcacaccactaggctgctgccggaa 38337157  T

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Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 43924924 - 43924749
Alignment:
Q  19 atgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaattgttgaagcatggtaattgagtgcc 118  Q
    |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43924924 atgcaccgctacttcaactctcttttttcctctcattctgaccaccaccgcacaccactaggctgctgccggaattgttgaagcatggtaatcgagtgcc 43924825  T
Q  119 atcactctgatcctcttatactcaacaccaaatataaatgaagatggtaattgagtgtctgttgattaaactatgt 194  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43924824 atcactctgttcctcttatactcaacaccagatataaatgaagatggtaattgagtgtctgttgattaaactatgt 43924749  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 43924629 - 43924698
Alignment:
Q  23 actgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 92  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  43924629 actgctacttcaactctctttcttcctctcattctgaccatcaccgcacaccactaggctgctgccggaa 43924698  T

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Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 27763554 - 27763627
Alignment:
Q  19 atgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 92  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27763554 atgcaccgctacttcaactctctttcttcctctcattctgaccaccaccgcacaccactaggctgctgccggaa 27763627  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 27763765 - 27763679
Alignment:
Q  108 aattgagtgccatcactctgatcctcttatactcaacaccaaatataaatgaagatggtaattgagtgtctgttgattaaactatgt 194  Q
    |||||| ||||||||||| | |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||    
T  27763765 aattgaatgccatcactccgttcctcttatactcaacaccagatataaatgaaggttgtaattgagtgtctgttgattaaactatgt 27763679  T

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Target: scaffold0189 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 12335 - 12400
Alignment:
Q  27 ctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 92  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12335 ctacttcaactctctttcttcctctcattctgaccaccaccgcacaccactaggctgctgccggaa 12400  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 14924815 - 14924884
Alignment:
Q  19 atgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 92  Q
    |||||| |||||||||||||||||    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  14924815 atgcaccgctacttcaactctctt----cctctcattctgaccaccaccacacaccactaggctgctgccggaa 14924884  T

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