View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18716_high_5 (Length: 474)
Name: NF18716_high_5
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18716_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 8508265 - 8507985
Alignment:
| Q |
19 |
ataccgatgtaacatatgaaataaataatatgcataatatgacagttataggaaacttgggggatcctatagttctccaaggagatccgccactgcgtgc |
118 |
Q |
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| T |
8508265 |
ataccgatgtaacatatgaaataa----tatgcataatatgacagttataggaaacttgggggatcctatgggtctccaaggagatccgccactgcgtcc |
8508170 |
T |
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| Q |
119 |
ctggtctgatacatcttttacatggcttacagtatatgcaatggaagaatttaaatgtattaagtataggtattgttgccccataagtatatctcatatg |
218 |
Q |
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| T |
8508169 |
ctggtctgatacatcttttacatggcttagagtatatgcaatggaagaatttaaatgtattaagtataggtattgttgccccataagtatatctcatatg |
8508070 |
T |
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| Q |
219 |
gtaaaatattgcagagacaattgatatgttgggatgcagagtcaacctgtaatctccacttcttaac--atatgaatttagccgc |
301 |
Q |
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| T |
8508069 |
gtaaaatattgcagagacagttgatatgttggaatgcggagtcaacctgtaatctccacttctcaacatatatgaatttagccgc |
8507985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 352 - 463
Target Start/End: Complemental strand, 8507856 - 8507745
Alignment:
| Q |
352 |
gtacaaatgaatctcaattatcttttgggattcgtatattcaataatatacataactatttttgtttacccaaaaacactttgtgcacaagttgaagagg |
451 |
Q |
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| T |
8507856 |
gtacaaatgaatctcaattatcttttgggattcgtatactcattagtatacatagctatttttgtttacccaaaaacactttgtgcacaagttgaagagg |
8507757 |
T |
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| Q |
452 |
catgggtttctt |
463 |
Q |
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| T |
8507756 |
catgggtttctt |
8507745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 8507913 - 8507878
Alignment:
| Q |
302 |
aaataatatggtattattaggtatgtacatatgttt |
337 |
Q |
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| T |
8507913 |
aaataatatggtattattaggtatgtacatatgttt |
8507878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 46095773 - 46095735
Alignment:
| Q |
43 |
ataatatgcataatatgacagttataggaaacttggggg |
81 |
Q |
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| T |
46095773 |
ataatatgcataatatgataattataggaaacttggggg |
46095735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 15091288 - 15091330
Alignment:
| Q |
209 |
atctcatatggtaaaatattgcagagacaattgatatgttggg |
251 |
Q |
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| T |
15091288 |
atctcagatggtaaaatattgcaaagacatttgatatgttggg |
15091330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 33834781 - 33834818
Alignment:
| Q |
219 |
gtaaaatattgcagagacaattgatatgttgggatgca |
256 |
Q |
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| T |
33834781 |
gtaaaatgttgcagagacatttgatatgttgggatgca |
33834818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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