View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18716_high_6 (Length: 453)
Name: NF18716_high_6
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18716_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 26753628 - 26753202
Alignment:
| Q |
19 |
gaattagctttaaaactcctattatttaatctgaaccaaatgcatgtttaattaaaggtaagttcttgggtatctcagagtttggttgagtatcggtacc |
118 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26753628 |
gaattagctttaaaactcctcttattcaatctgaaccaaatgcatgtttaattaaaggtaagttcttggatatctcagagtttggttgagtatcggtacc |
26753529 |
T |
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| Q |
119 |
atttnnnnnnnnnnnnnn-tagtatttgaannnnnnnaaaataaatcaatatgaaaatatgacatagcatggattgatcggatgaggggtacatattcaa |
217 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
26753528 |
atttaaaaagaaaaaaaaatagtatttgaatttttttaaaataaatcaatatgaaaatatgacatagcatggattgatcagatgagggatacatattcaa |
26753429 |
T |
|
| Q |
218 |
ccaaactatgtgggcatcactgtcttcacacttcattcaaatatctcccctcccttccactcccatcttttgaaccagacatgtatattcatttaaatta |
317 |
Q |
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||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26753428 |
ccaaactatttggacatcattgtcttcacacttcattcaaatatctcccctcccttccactcccatcttttgaaccagacatgtatattcatttaaatta |
26753329 |
T |
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| Q |
318 |
attcctcttgtcttccttctcttttcctccgctcggttaatatttcgatcatctcctccgttgaatcaaaccgaccgacatttattatcttaaatgagtt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26753328 |
attcctcttgtcttccttctcttttcctccgctcggttaatatttcgatcatctcctccgttgaatcaaaccgaccgacctttattatcttaaatgagtt |
26753229 |
T |
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| Q |
418 |
ttaatctatataaatatcgagaataat |
444 |
Q |
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| T |
26753228 |
ttaatctatataaatatcgagaataat |
26753202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 46073259 - 46073329
Alignment:
| Q |
155 |
aaaataaatcaatatgaaaatatgacatagcatggattgatcggatgaggggtacatattcaaccaaacta |
225 |
Q |
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||||||||| |||||||||||| || || |||| ||||||| |||||||||||||||| ||||||||||| |
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| T |
46073259 |
aaaataaattaatatgaaaataggatatggcattgattgattggatgaggggtacatacccaaccaaacta |
46073329 |
T |
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