View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18716_high_9 (Length: 387)

Name: NF18716_high_9
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18716_high_9
NF18716_high_9
[»] chr7 (1 HSPs)
chr7 (19-373)||(44501110-44501464)
[»] chr3 (9 HSPs)
chr3 (100-372)||(20994809-20995083)
chr3 (265-320)||(20977477-20977532)
chr3 (100-369)||(20981650-20981921)
chr3 (241-320)||(2996371-2996450)
chr3 (167-320)||(20949493-20949649)
chr3 (247-320)||(45856777-45856850)
chr3 (256-370)||(45870386-45870502)
chr3 (191-317)||(20948805-20948934)
chr3 (247-315)||(45881805-45881873)
[»] chr4 (1 HSPs)
chr4 (253-372)||(3978166-3978287)
[»] chr5 (3 HSPs)
chr5 (18-230)||(7976471-7976683)
chr5 (31-231)||(7895202-7895403)
chr5 (231-370)||(38142015-38142156)


Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 44501110 - 44501464
Alignment:
Q  19 gttaatgcaggaaaattgagagatttcggaaacattgtttcatgacctacaccagagtaaataccaagcttaaaatatgtcaaagtctgagatgaaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501110 gttaatgcaggaaaattgagagatttcggaaacattgtttcatgacctacaccagagtaaataccaagcttaaaatatgtcaaagtctgagatgaaaata 44501209  T
Q  119 tgctaggcggaatttgtgcattgtcagcaaggacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaa 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  44501210 tgctaggcggaatttgtgcattgtcagcatggacactaagtcctgaccgctggactatgtgtgaaatagcacaattcacaatccttttgagtaggtgaaa 44501309  T
Q  219 ctccaagcgaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaa 318  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44501310 ctccaagcaaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgaaa 44501409  T
Q  319 gtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttc 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501410 gtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttc 44501464  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 372
Target Start/End: Original strand, 20994809 - 20995083
Alignment:
Q  100 aaagtctgagatgaaaatatgctaggcggaatttgtgcattgtcagcaag-gacactaagtcctgacagctggactttgtgtaaaatagcacaattcaca 198  Q
    |||| |||| ||||||||| |||| | |||||||| ||| ||||| |||| ||||| ||||  | || ||||||| |||||| |||||||  ||||||||    
T  20994809 aaaggctgaaatgaaaataagctatgaggaatttgcgcaatgtca-caagtgacacaaagttgtaactgctggacattgtgtgaaatagcgtaattcaca 20994907  T
Q  199 atccttttgagtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagaca 295  Q
    ||| |||| |||   |||  ||| ||||| ||||||||  ||||||| | | |||  || |||||||||||||||||  |||||||||||| ||||||||    
T  20994908 atctttttaagt---tgaggctcaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagaca 20995004  T
Q  296 cgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaagacgtttccaaagatcctt 372  Q
    ||||| |  ||||||||||| ||||  |||| |||  |  ||||  | |||| ||||||||||||||||||||||||||    
T  20995005 cgaatgtggtgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatcctt 20995083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 20977532 - 20977477
Alignment:
Q  265 gaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 320  Q
    ||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||    
T  20977532 gaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttgtaagt 20977477  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 369
Target Start/End: Original strand, 20981650 - 20981921
Alignment:
Q  100 aaagtctgagatgaaaatatgctaggcggaatttgtgcattgtcagcaaggacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaa 199  Q
    |||| |||| ||||||||| |||| | |||||||| ||| |||||  |  ||||| ||||  | || ||||||| |||||| |||||||  |||||||||    
T  20981650 aaaggctgaaatgaaaataggctatgaggaatttgcgcaatgtcacaattgacacaaagttgtaaccgctggacattgtgtgaaatagcgtaattcacaa 20981749  T
Q  200 tccttttgagtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacac 296  Q
    || |||| |||   |||  ||| ||||| ||||||||  ||||||| | | |||  || |||||||||||||||||  |||||||||||| |||||||||    
T  20981750 tctttttaagt---tgaggctcaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacac 20981846  T
Q  297 gaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaagacgtttccaaagatc 369  Q
    |||| |  ||||||||||| || |  |||| |||  |  ||||  | |||| |||||||||||||||||||||||    
T  20981847 gaatgtggtgaatatcttgaaattacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatc 20981921  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 320
Target Start/End: Original strand, 2996371 - 2996450
Alignment:
Q  241 aaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 320  Q
    |||| |||||| || | ||| ||||||||||||  ||||||||||||||||||||| |||||  ||||| ||||||||||    
T  2996371 aaatcgagagtctgcaatgaaatagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagt 2996450  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 320
Target Start/End: Complemental strand, 20949649 - 20949493
Alignment:
Q  167 gctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagat 263  Q
    ||||||| ||||||  ||||||  ||||||||||||||||||||| ||||  ||| || |||||| ||||  ||| ||| | | |||  | || || |||    
T  20949649 gctggacattgtgtttaatagcgtaattcacaatccttttgagtatgtgaggctctaaacgaccaatatgatgcttaaaatcaagagcttataatgtgat 20949550  T
Q  264 agaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 320  Q
    |||||||||   |||||||||||  ||||||||||||||  ||||||||||||||||    
T  20949549 agaggaatcacaaagagataaaattttagacacgaatttggtgaatatcttgtaagt 20949493  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 45856777 - 45856850
Alignment:
Q  247 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 320  Q
    |||| ||| |||| ||||||||||||  |||||||||||||||||||||| || ||  ||||||||||| ||||    
T  45856777 agagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaatatcttgaaagt 45856850  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 370
Target Start/End: Original strand, 45870386 - 45870502
Alignment:
Q  256 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaa 353  Q
    |||||||||||||||||  | |||||||||||| |||| || ||| |  |||||||||| |||||  |||| ||   |||||||  |||||| | |||||    
T  45870386 agtgagatagaggaatcccggagagataaaaccctagaaacaaatctggtgaatatcttataagttcgaaagtcatcagaatgcaatataagagaaggaa 45870485  T
Q  354 gacgtttccaaagatcc 370  Q
    |||||||||||||||||    
T  45870486 gacgtttccaaagatcc 45870502  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 317
Target Start/End: Complemental strand, 20948934 - 20948805
Alignment:
Q  191 aattcacaatccttttgagtaggtgaaactccaagcgaccattatggc---tgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaac 287  Q
    |||||||||||||||| |||| ||||  ||| |||||| || |||| |   | ||||  |||||||||| || |||||||| |||  ||||||||||||     
T  20948934 aattcacaatccttttaagtatgtgaggctctaagcgaacaatatgacgcttaaaatcaagagtgtgtattgcgatagagggatcacgaagagataaaat 20948835  T
Q  288 cttagacacgaatttattgaatatcttgta 317  Q
    ||||||||| || ||  |||||||||||||    
T  20948834 cttagacacaaacttggtgaatatcttgta 20948805  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 45881805 - 45881873
Alignment:
Q  247 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttg 315  Q
    |||||||| |||| ||||||||||||    |||||||||||||| ||||| |||||  |||||||||||    
T  45881805 agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttg 45881873  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 372
Target Start/End: Complemental strand, 3978287 - 3978166
Alignment:
Q  253 tgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcag 350  Q
    ||||||| ||||||||||||| ||||| ||||||| |||||||| ||| |  ||||| |||||||||    ||| ||||||||||||  | |||| | ||    
T  3978287 tgtagtgcgatagaggaatcgcgaagaaataaaactttagacactaatctggtgaatttcttgtaagctccaaagtctgaagaatgcaatgtaagagtag 3978188  T
Q  351 gaagacgtttccaaagatcctt 372  Q
    ||||||||||||||||||||||    
T  3978187 gaagacgtttccaaagatcctt 3978166  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 7976471 - 7976683
Alignment:
Q  18 agttaatgcaggaaaattgagagatttcggaaacattgtttcatgacctacaccagagtaaataccaagcttaaaatatgtcaaagtctgagatgaaaat 117  Q
    ||||| ||| || ||||||| |||||| ||||||| ||||||||||||| ||  || |||| ||  |||||||| || ||| ||||| ||| |||||||     
T  7976471 agttagtgccggcaaattgaaagattttggaaacaatgtttcatgacctccattagggtaagtagaaagcttaagatgtgttaaagtatgacatgaaaac 7976570  T
Q  118 atgctaggcggaatttgtgcattgtcagcaaggacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaa 217  Q
    ||  | || ||||| ||||||    ||| |  ||  | ||||||| || ||||||| |||||| |||||||| ||||||||||||||||||||| ||||     
T  7976571 atcgtcggtggaatatgtgcaagaacagtatagaaccaaagtcctaaccgctggacattgtgtgaaatagcataattcacaatccttttgagtaagtgag 7976670  T
Q  218 actccaagcgacc 230  Q
     ||| ||||||||    
T  7976671 gctctaagcgacc 7976683  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 7895403 - 7895202
Alignment:
Q  31 aaattgagagatttcggaaacattgtttcatgacctacaccagagtaaa-taccaagcttaaaatatgtcaaagtctgagatgaaaatatgctaggcgga 129  Q
    ||||||| |||||| ||||||| ||||||||||||| ||  || ||||| ||| |||||||| || ||| |||| |||| ||||||| ||||| ||   |    
T  7895403 aaattgaaagattttggaaacagtgtttcatgacctccattagggtaaagtacaaagcttaagatgtgttaaagactgacatgaaaacatgcttggtaaa 7895304  T
Q  130 atttgtgcattgtcagca-aggacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcga 228  Q
    || ||| || | |||| | |||| || ||||||| | |  ||||| |||||| |||||||| |||||||||| |||||||||| ||||  ||| ||||||    
T  7895303 atgtgtccaatttcagtatagga-acaaagtcctaataattggacattgtgtgaaatagcataattcacaattcttttgagtaagtgaggctctaagcga 7895205  T
Q  229 cca 231  Q
    |||    
T  7895204 cca 7895202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 370
Target Start/End: Original strand, 38142015 - 38142156
Alignment:
Q  231 attatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgta-agtgtgaaaatc 329  Q
    |||||| ||||||||||||| ||  |||| || |||||||||  |||||| ||||||| ||  ||||||||| |||||||||  ||| |||  |||| ||    
T  38142015 attatgtctgaaattgagagagttcagtgcgagagaggaatcacgaagagttaaaaccctatgcacgaatttgttgaatatc-ggtatagttcgaaagtc 38142113  T
Q  330 tgaagaatgc--tataagtgcaggaagacgtttccaaagatcc 370  Q
    |||||||| |  |||||| ||||||||| ||||||| ||||||    
T  38142114 tgaagaatccaatataagagcaggaagaagtttccatagatcc 38142156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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