View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18716_low_11 (Length: 355)
Name: NF18716_low_11
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18716_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 4678122 - 4677810
Alignment:
| Q |
16 |
ataaaaattaatagtaaattcccatcatccatttatctagctaataaaatcgcaattgcattataatcaagataatcaagattttaaataaaggttagca |
115 |
Q |
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| T |
4678122 |
ataaaaattaatagtaaattcccatcatccatttatctagctaataaaatcgcaattgcattataatcaagat---------tttaaataaaggttagca |
4678032 |
T |
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| Q |
116 |
accacaactctataatttattttcgttgttgtaatcacatcgcatctacgattgagattgcaacaattgtatttgatagtcattaatgacaatatcaaga |
215 |
Q |
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| T |
4678031 |
accacaagtctataatttattttcgttgttgtaatcacatcgcatctacgattgagattacaacaattgtatttgatagtcattaatgacaatatcaaga |
4677932 |
T |
|
| Q |
216 |
atagctacacaacttcattagagtagcttttctttgtcaatagatgatttttaaaaatagaaataaaataattttcattatgataaacaaaacaacnnnn |
315 |
Q |
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| T |
4677931 |
atagctacacaacttcattagagtagcttttctttgtcaatagatgatttttaaaaatagaaataaaataattttcattatgataaacaaaacaactttt |
4677832 |
T |
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| Q |
316 |
nnnaaaacctctaaatattcat |
337 |
Q |
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| T |
4677831 |
tttaaaacctctaaatattcat |
4677810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 8671200 - 8671163
Alignment:
| Q |
22 |
attaatagtaaattcccatcatccatttatctagctaa |
59 |
Q |
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| T |
8671200 |
attaatagtaaattcccatcattcatttatccagctaa |
8671163 |
T |
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