View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18716_low_13 (Length: 319)
Name: NF18716_low_13
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18716_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 34344911 - 34345207
Alignment:
| Q |
15 |
aatctaaacaagtcataaaacataaggtacattcttttcaaaatttcagagttaaatgcatagtctctttaaaatcgcaacatttccagtataaccctta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34344911 |
aatctaaacaagtcataaaacataaggtacattctttttaaaatttcagagttaaatgcatagtctctttaaaatcgcaacatttcaagtataaccctta |
34345010 |
T |
|
| Q |
115 |
tataaatcacgacttagattgtacccnnnnnnnncatatttcacaaaataaagagttatnnnnnnntaccgttggctttataatacgtttttgaaaattg |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34345011 |
tataaatcacgacttagattgtacc-aaaaaaaacatatttcacaaaataaagagttataaaaaa-taccgttggctttataatacgtttttgaaaattg |
34345108 |
T |
|
| Q |
215 |
acttagattttacatttcatatttctaaagttttttcatcaaacaaacctttattcttatttcaaatcctaatactctttttcttttcagaattatcta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
34345109 |
acttagattttacatttcatatttctaaagttttttcatcaaacaaacctttattcttatttcaaatcctaatactctttttctattcagaattgtcta |
34345207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University