View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18716_low_17 (Length: 237)
Name: NF18716_low_17
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18716_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 45169671 - 45169771
Alignment:
| Q |
1 |
gtatcatctctccctcgatggaccccaatcatttgcagttggtttatcgtgtagcagcaggaaggaaccgttccatttatagggataaattttctctttc |
100 |
Q |
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| T |
45169671 |
gtatcatctctccctcgatggaccccaatcatttgcagttggtttatggtgtagcagcaggaaggaaccgttccatttatagggataaattttctctttc |
45169770 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
45169771 |
a |
45169771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 45172802 - 45172882
Alignment:
| Q |
143 |
gaccatatgcagattatgaggaaccataagactgctcgtgatgcctgctcccataagaaatcacggagccacttgttaatg |
223 |
Q |
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| T |
45172802 |
gaccatatgcagattatgaggaaccataagactgctcgggatgcctgctcccataagaaatcacggagccacttgttaatg |
45172882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 13218165 - 13218089
Alignment:
| Q |
143 |
gaccatatgcagattatgaggaaccataagactg-----ctcgtgatgcctgctcccataagaaatcacggagccac |
214 |
Q |
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| T |
13218165 |
gaccatatgcagataatgaggaaccataagactgaattacctgggatgcctgcgcccataagaaatcgcggagccac |
13218089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 54180969 - 54181002
Alignment:
| Q |
143 |
gaccatatgcagattatgaggaaccataagactg |
176 |
Q |
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| T |
54180969 |
gaccatatgcagataatgaggaaccataagactg |
54181002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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