View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18716_low_22 (Length: 209)

Name: NF18716_low_22
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18716_low_22
NF18716_low_22
[»] chr6 (30 HSPs)
chr6 (14-209)||(26861375-26861569)
chr6 (94-209)||(31284126-31284241)
chr6 (88-209)||(27593254-27593375)
chr6 (88-209)||(27677848-27677969)
chr6 (94-209)||(27678784-27678899)
chr6 (94-209)||(27706636-27706751)
chr6 (94-209)||(26622814-26622929)
chr6 (94-209)||(26728792-26728907)
chr6 (116-209)||(26884023-26884116)
chr6 (76-209)||(27338299-27338432)
chr6 (76-209)||(27399039-27399172)
chr6 (86-209)||(26655819-26655942)
chr6 (86-209)||(26761790-26761913)
chr6 (94-209)||(27229070-27229185)
chr6 (86-209)||(28786108-28786231)
chr6 (86-209)||(28792229-28792352)
chr6 (77-209)||(27698728-27698860)
chr6 (77-209)||(27725079-27725211)
chr6 (94-209)||(26802280-26802395)
chr6 (94-209)||(28780977-28781092)
chr6 (77-209)||(27718613-27718745)
chr6 (94-209)||(27611236-27611351)
chr6 (116-209)||(26823700-26823793)
chr6 (118-209)||(27604939-27605030)
chr6 (118-209)||(28325343-28325434)
chr6 (154-209)||(28242702-28242757)
chr6 (94-160)||(26018770-26018836)
chr6 (94-160)||(26139474-26139540)
chr6 (154-203)||(2184186-2184235)
chr6 (154-206)||(28234462-28234514)
[»] scaffold0277 (2 HSPs)
scaffold0277 (86-209)||(4905-5028)
scaffold0277 (94-209)||(13866-13981)
[»] scaffold0349 (3 HSPs)
scaffold0349 (77-209)||(3656-3788)
scaffold0349 (77-209)||(14589-14721)
scaffold0349 (77-183)||(8061-8167)
[»] scaffold1254 (1 HSPs)
scaffold1254 (86-209)||(151-274)
[»] scaffold0419 (1 HSPs)
scaffold0419 (86-209)||(7355-7478)
[»] chr4 (5 HSPs)
chr4 (86-209)||(18699621-18699744)
chr4 (86-209)||(18724306-18724429)
chr4 (94-208)||(18731726-18731840)
chr4 (94-209)||(18655698-18655813)
chr4 (94-209)||(18679788-18679903)
[»] chr1 (3 HSPs)
chr1 (86-182)||(28164610-28164706)
chr1 (117-209)||(28127901-28127993)
chr1 (89-209)||(268578-268698)
[»] scaffold0038 (3 HSPs)
scaffold0038 (118-209)||(116658-116749)
scaffold0038 (154-209)||(42864-42919)
scaffold0038 (154-206)||(34623-34675)
[»] chr8 (1 HSPs)
chr8 (94-209)||(29274004-29274119)
[»] scaffold0713 (1 HSPs)
scaffold0713 (94-160)||(5916-5982)
[»] scaffold0019 (1 HSPs)
scaffold0019 (118-208)||(58517-58607)
[»] scaffold0781 (1 HSPs)
scaffold0781 (154-203)||(91-140)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 26861375 - 26861569
Alignment:
Q  14 cacagaccacagttacttatttgttcatagtttgcattcccaaactattttttctcatccaattatttatcccaattctgatggctatgcaatcaccttg 113  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26861375 cacagaccacagttacttatttgttcatagtttgcattcctaaactattttttctcatccaattatttatcc-aattctgatggctatgcaatcaccttg 26861473  T
Q  114 ctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26861474 ctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggttttaccggtaatctctacaa 26861569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 31284126 - 31284241
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |    
T  31284126 atggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaataccaagtattccttagtttcaggggaagtgacactcggtatggtttca 31284225  T
Q  194 ccggcaatctctacaa 209  Q
    ||||||||||||||||    
T  31284226 ccggcaatctctacaa 31284241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 27593375 - 27593254
Alignment:
Q  88 attctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatg 187  Q
    ||||| ||||||||||||||||||| ||||||| |||| ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||| |    
T  27593375 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacg 27593276  T
Q  188 gttttaccggcaatctctacaa 209  Q
    |||| |||||||||||||||||    
T  27593275 gtttcaccggcaatctctacaa 27593254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 27677969 - 27677848
Alignment:
Q  88 attctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatg 187  Q
    ||||| ||||||||||||||||||| ||||||| |||| ||||||||||  | |||||||||||||||||||| |||||||||||||||||||||||| |    
T  27677969 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcggtacg 27677870  T
Q  188 gttttaccggcaatctctacaa 209  Q
    |||| |||||||||||||||||    
T  27677869 gtttcaccggcaatctctacaa 27677848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 27678784 - 27678899
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  27678784 atggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggtttca 27678883  T
Q  194 ccggcaatctctacaa 209  Q
    |||| |||||||||||    
T  27678884 ccgggaatctctacaa 27678899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 27706751 - 27706636
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||  | ||||||||||||||||||||||||||||||| ||||||||||||| ||||| |    
T  27706751 atggctatgcaatcacctttctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaggtgacactcggtacggtttca 27706652  T
Q  194 ccggcaatctctacaa 209  Q
    | ||||||||||||||    
T  27706651 caggcaatctctacaa 27706636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 26622814 - 26622929
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||| | |||||||||||| |||||||||  ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |    
T  26622814 atggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggtttca 26622913  T
Q  194 ccggcaatctctacaa 209  Q
    | || |||||||||||    
T  26622914 ctggaaatctctacaa 26622929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 26728792 - 26728907
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||| | |||||||||||| |||||||||  ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |    
T  26728792 atggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggtttca 26728891  T
Q  194 ccggcaatctctacaa 209  Q
    | || |||||||||||    
T  26728892 ctggaaatctctacaa 26728907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 26884023 - 26884116
Alignment:
Q  116 cttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||||||  |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||    
T  26884023 cttcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaa 26884116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 27338432 - 27338299
Alignment:
Q  76 ttatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtg 175  Q
    |||||| || ||||||| |||||||||||||||| || |||||||||||| ||||||| ||| ||||||||||| || ||||||||||| || |  | ||    
T  27338432 ttatttctctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattg 27338333  T
Q  176 acactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||  || |||||||||||||||||||||||    
T  27338332 acactctttacggttttaccggcaatctctacaa 27338299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 27399172 - 27399039
Alignment:
Q  76 ttatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtg 175  Q
    |||||| || ||||||| |||||||||||||||| || |||||||||||| ||||||| ||| ||||||||||| || ||||||||||| || |  | ||    
T  27399172 ttatttctctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattg 27399073  T
Q  176 acactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||  || |||||||||||||||||||||||    
T  27399072 acactctttacggttttaccggcaatctctacaa 27399039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 26655819 - 26655942
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| |||||||||| ||| ||||||||  |||||||||| || ||||||||||| ||||||||||| || || | |||||| ||| |    
T  26655819 caattctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggca 26655918  T
Q  186 tggttttaccggcaatctctacaa 209  Q
     |||||||||||||||||||||||    
T  26655919 cggttttaccggcaatctctacaa 26655942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 26761790 - 26761913
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| |||||||||| ||| ||||||||  |||||||||| || ||||||||||| ||||||||||| || || | |||||| ||| |    
T  26761790 caattctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggca 26761889  T
Q  186 tggttttaccggcaatctctacaa 209  Q
     |||||||||||||||||||||||    
T  26761890 cggttttaccggcaatctctacaa 26761913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 27229070 - 27229185
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    |||||||| |||||||||| ||||||||||||  |||||| ||||||||  |||||||| ||||| ||||| || || | |||||||||| | |||||||    
T  27229070 atggctatacaatcaccttcctcttcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggtttta 27229169  T
Q  194 ccggcaatctctacaa 209  Q
    ||||||||||||||||    
T  27229170 ccggcaatctctacaa 27229185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 28786108 - 28786231
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| |||||||||| ||| ||||||||  |||||||||||||||  |||||||| ||||||||||| || || | |||||||||  |    
T  28786108 caattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgcca 28786207  T
Q  186 tggttttaccggcaatctctacaa 209  Q
     ||||||||||| |||||||||||    
T  28786208 cggttttaccggaaatctctacaa 28786231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 28792229 - 28792352
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| |||||||||| ||| ||||||||  |||||||||||||||  |||||||| ||||||||||| || || | |||||||||  |    
T  28792229 caattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgcca 28792328  T
Q  186 tggttttaccggcaatctctacaa 209  Q
     ||||||||||| |||||||||||    
T  28792329 cggttttaccggaaatctctacaa 28792352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 27698860 - 27698728
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||||| |||||||| |||||||||| ||| ||| ||||  |||||||||||||||  |||||||| ||| ||||||| || || | |||    
T  27698860 tatttctctcaattctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactga 27698761  T
Q  177 cactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||| | ||||||||||| |||||||||||    
T  27698760 cactcggcacggttttaccggaaatctctacaa 27698728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 27725211 - 27725079
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||| | |||||||| |||||||||| ||| ||||||||  |||||||||||||||  |||||||| ||||| ||||| || || | |||    
T  27725211 tatttctctcaattgtcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactga 27725112  T
Q  177 cactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||| | ||||||||||| |||||||||||    
T  27725111 cactcggcacggttttaccggaaatctctacaa 27725079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 26802280 - 26802395
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||| || |||| ||| ||||||||  |||| ||||||||||  |||||||| ||||||||||| || || | |||||||||||| |||||||    
T  26802280 atggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggtttta 26802379  T
Q  194 ccggcaatctctacaa 209  Q
    | ||||||||||||||    
T  26802380 cgggcaatctctacaa 26802395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 28780977 - 28781092
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||| ||||| ||||||||||||  |||||| || |||||  |||||||| ||||||||||| || || | |||||||||  | |||||||    
T  28780977 atggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 28781076  T
Q  194 ccggcaatctctacaa 209  Q
    ||||||||||||||||    
T  28781077 ccggcaatctctacaa 28781092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 27718745 - 27718613
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||||| |||||||| |||||||||| ||| ||||||||  | ||| |||||||||  |||||||| ||||||||||| || || | |||    
T  27718745 tatttctctcaattctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactga 27718646  T
Q  177 cactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||| |  |||||||||| |||||||||||    
T  27718645 cactcggcacagttttaccggaaatctctacaa 27718613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 27611351 - 27611236
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||| | ||| |||||| |||||  |||||||||||||||  |||||||| ||||||||||| || || | |||||||||  | |||||||    
T  27611351 atggctatgcaattagcttcctcttcttcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 27611252  T
Q  194 ccggcaatctctacaa 209  Q
    |||| |||||||||||    
T  27611251 ccggaaatctctacaa 27611236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 26823700 - 26823793
Alignment:
Q  116 cttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||||||  |||| ||||  |||||||||||||| || |||||||| |||||   ||||||||||||||  ||||||||||||||||||||    
T  26823700 cttcctcttcagtttcatatgatttcaaataccaagtgtttctcagttttagaggcgctgacactcggtatgaatttaccggcaatctctacaa 26823793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 27605030 - 27604939
Alignment:
Q  118 tcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||||  ||||||||| |||||  |||||||| ||||| ||||| || || | ||||||||| || |||||||||||||||||||||||    
T  27605030 tcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaa 27604939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 28325343 - 28325434
Alignment:
Q  118 tcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||||| |||||||||||||||  ||  | || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||    
T  28325343 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaa 28325434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 28242702 - 28242757
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||    
T  28242702 ttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaa 28242757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 26018836 - 26018770
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctca 160  Q
    |||||||| ||||||||||  ||| |||| ||| ||||||||||| ||| ||||||||| |||||||    
T  26018836 atggctattcaatcaccttcgtctacctcatccttttcctatggactcacataccaagtgttcctca 26018770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 26139540 - 26139474
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctca 160  Q
    |||| ||| |||||||||| |||| |||| ||| ||||||||||| ||| ||||||||| |||||||    
T  26139540 atggttattcaatcaccttcctctacctcatccttttcctatggactcacataccaagtgttcctca 26139474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 2184186 - 2184235
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatct 203  Q
    ||||| ||||||||||||  |||||||||  |||||||||||||||||||    
T  2184186 ttcctaagtttcagaggagctgacactcgccatggttttaccggcaatct 2184235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 28234462 - 28234514
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctcta 206  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||  ||||||||    
T  28234462 ttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctcta 28234514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 5028 - 4905
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| |||||||| |||||||||| ||| ||||||||  |||||||||||||||  |||||||| ||||||||||| || || | |||||||||  |    
T  5028 caattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgcca 4929  T
Q  186 tggttttaccggcaatctctacaa 209  Q
     ||||||||||| |||||||||||    
T  4928 cggttttaccggaaatctctacaa 4905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 13981 - 13866
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||| ||||| ||||||||||||  |||||| || |||||  |||||||| ||||||||||| || || | |||||||||  | |||||||    
T  13981 atggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 13882  T
Q  194 ccggcaatctctacaa 209  Q
    ||||||||||||||||    
T  13881 ccggcaatctctacaa 13866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 3788 - 3656
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||| | |||||||| |||||||||| ||| ||||||||  |||||||||||||||  |||||||| ||||| ||||| || || | |||    
T  3788 tatttctctcaattgtcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactga 3689  T
Q  177 cactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||| | ||||||||||| |||||||||||    
T  3688 cactcggcacggttttaccggaaatctctacaa 3656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 14721 - 14589
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||||| |||||||| |||||||||| ||| ||| ||||  |||||||||||||||  |||||||| ||| ||||||| || || | |||    
T  14721 tatttctctcaattctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactga 14622  T
Q  177 cactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||| | ||||||||||| |||||||||||    
T  14621 cactcggcacggttttaccggaaatctctacaa 14589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 8167 - 8061
Alignment:
Q  77 tatttatcccaattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtga 176  Q
    ||||| || ||||||| |||||||| |||||||||| ||| ||||||||  | ||| |||||||||  |||||||| ||||||||||| || || | |||    
T  8167 tatttctctcaattctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactga 8068  T
Q  177 cactcgg 183  Q
    |||||||    
T  8067 cactcgg 8061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 274 - 151
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| ||||||||||||||||||  ||||||||||||  |||| |||| |||||  |||||||| ||||| ||||| || || | |||||||||  |    
T  274 caattctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgcca 175  T
Q  186 tggttttaccggcaatctctacaa 209  Q
     |||||||||||||||||||||||    
T  174 cggttttaccggcaatctctacaa 151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 7355 - 7478
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| ||||||||||||||||||  ||||||||||||  |||| |||| |||||  |||||||| ||||| ||||| || || | |||||||||  |    
T  7355 caattctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgcca 7454  T
Q  186 tggttttaccggcaatctctacaa 209  Q
     |||||||||||||||||||||||    
T  7455 cggttttaccggcaatctctacaa 7478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 18699744 - 18699621
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| ||||||||||||||||||| ||| ||||||||  |||||||| ||||||  |||||||| |||||||| ||||| || | |||||||||  |    
T  18699744 caattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcgtga 18699645  T
Q  186 tggttttaccggcaatctctacaa 209  Q
     |||||||| ||| ||||||||||    
T  18699644 cggttttactggccatctctacaa 18699621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 18724429 - 18724306
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggta 185  Q
    ||||||| ||||||||||||||||||| ||| ||||||||  |||||||| ||||||  |||||||| |||||||| ||||| || |||||||||||  |    
T  18724429 caattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaa 18724330  T
Q  186 tggttttaccggcaatctctacaa 209  Q
     |||||||| ||  ||||||||||    
T  18724329 cggttttactggtcatctctacaa 18724306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 18731840 - 18731726
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||||| ||| ||||||||  |||||||| ||||||  |||||||| |||||||| ||||| || |||||||||||  | |||||||    
T  18731840 atggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttta 18731741  T
Q  194 ccggcaatctctaca 208  Q
    | ||| |||||||||    
T  18731740 ctggccatctctaca 18731726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 18655813 - 18655698
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||| ||||||||||| ||| ||||||||  |||||||| ||||||  |||||||| |||||||| ||||| || |||||||||||  | |||||||    
T  18655813 atggctaggcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggtttta 18655714  T
Q  194 ccggcaatctctacaa 209  Q
    | ||  ||||||||||    
T  18655713 ctgggcatctctacaa 18655698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 18679903 - 18679788
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||||| ||| | ||||||  |||||||| ||||||  |||||||| |||||||| ||||| || |||||||||||  | |||||||    
T  18679903 atggctatgcaatcaccttcctcattctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggtttta 18679804  T
Q  194 ccggcaatctctacaa 209  Q
    | ||  ||||||||||    
T  18679803 ctggtcatctctacaa 18679788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 28164706 - 28164610
Alignment:
Q  86 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcg 182  Q
    ||||||| |||||||| | ||| | || |||||||||||| |||||||||||||||| ||||||||| ||||||||||| || || |||||||||||    
T  28164706 caattctcatggctatacgatcgcattcctcttcctcttcaatttcctatggattcacataccaagtgttcctcagttttaggggcagtgacactcg 28164610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 28127993 - 28127901
Alignment:
Q  117 ttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||| ||||| || |||||||||||  | ||||| || ||| ||||||||||    
T  28127993 ttcctcttcaatttcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaa 28127901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 268698 - 268578
Alignment:
Q  89 ttctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatgg 188  Q
    |||| ||||||||||||||||||| |||||||||||| || || ||||||||    ||||| || |||||||  ||||||||  ||||||||||  | ||    
T  268698 ttctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtgacactcgtgaggg 268599  T
Q  189 ttttaccggcaatctctacaa 209  Q
    |||||  ||| ||||||||||    
T  268598 ttttattggccatctctacaa 268578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 116658 - 116749
Alignment:
Q  118 tcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||||||| |||||||||||||||  ||  | || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||    
T  116658 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaa 116749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 42864 - 42919
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctacaa 209  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||    
T  42864 ttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaa 42919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 34623 - 34675
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctcta 206  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||  ||||||||    
T  34623 ttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctcta 34675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 29274119 - 29274004
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggtttta 193  Q
    ||||||||||||||||||| |||||||||||| || || ||||||||||  ||||| || |||||||  || |||||  ||||||||||  | |||||||    
T  29274119 atggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggtttta 29274020  T
Q  194 ccggcaatctctacaa 209  Q
      ||| ||||||||||    
T  29274019 ttggccatctctacaa 29274004  T

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Target: scaffold0713 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 5916 - 5982
Alignment:
Q  94 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaagtattcctca 160  Q
    |||| ||| |||||||||| |||| |||| ||| ||||||||||| ||| ||||||||| |||||||    
T  5916 atggttattcaatcaccttcctctacctcatccttttcctatggactcacataccaagtgttcctca 5982  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 58607 - 58517
Alignment:
Q  118 tcctcttccatttcctatggattcaaataccaagtattcctcagtttcagaggaagtgacactcggtatggttttaccggcaatctctaca 208  Q
    ||||||||| | |||||||||||||  || || || ||||| || || |||||  |||||||||| ||||||||||| || ||||||||||    
T  58607 tcctcttccttctcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctaca 58517  T

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Target: scaffold0781 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 140 - 91
Alignment:
Q  154 ttcctcagtttcagaggaagtgacactcggtatggttttaccggcaatct 203  Q
    ||||| ||||||||||||  |||||||||  |||||||||||||||||||    
T  140 ttcctaagtttcagaggagctgacactcgccatggttttaccggcaatct 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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