View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18716_low_3 (Length: 640)
Name: NF18716_low_3
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18716_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 13558055 - 13558360
Alignment:
| Q |
13 |
aatattacggtagtagattccaccattgcaacaggtaaataaagtttatttttatccaattcaatttaagttattgaattttaataacacaaagcattca |
112 |
Q |
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| T |
13558055 |
aatattacggtagtagattccaccattgcaacaggtaaataaagtttatttttatccaattcaatttaagttattgaattttaataacacaaagcattca |
13558154 |
T |
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| Q |
113 |
ataatgtttttcttnnnnnnnntaatcaatactctttcgtcacaacatgcatgagtttaaaatcacatgtcatactcataactatgtggaaatatatgtc |
212 |
Q |
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| T |
13558155 |
ataatgtttttcttaaaaaaaataatcaatactctt-cggcacaacatgcatgagtttaaaatcacatgtcatactcataactatgtggaaatatatgtc |
13558253 |
T |
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| Q |
213 |
tatattcatgtctaaaatattttgcattgatagtaaatatagattacatacatataaaaataatatacatgacattgtgaattgtataatttctttttaa |
312 |
Q |
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| T |
13558254 |
tatattcatgtctaaaatatttcgcattgatagtaaatatagattacattcatataaaaatattttacatgacattgtgaattgtataatttctttttaa |
13558353 |
T |
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| Q |
313 |
gtggaag |
319 |
Q |
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| T |
13558354 |
gtggaag |
13558360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 483 - 623
Target Start/End: Original strand, 13558562 - 13558702
Alignment:
| Q |
483 |
tcttattgtctatgtgcaattataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgctact |
582 |
Q |
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| T |
13558562 |
tcttattgtatatgtgcaattataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgctact |
13558661 |
T |
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| Q |
583 |
cgtgttgcatgtggtccaggccatggaataaggttatttct |
623 |
Q |
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| T |
13558662 |
cgtgttgcatgtggtccagggcatggaataaggttatttct |
13558702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Original strand, 13558402 - 13558449
Alignment:
| Q |
377 |
aaacattaggtttaaatgttaatgttttttcatacaatgataagtatt |
424 |
Q |
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| T |
13558402 |
aaacattaggtttaaatgttaatgttttttcatacaatgataggtatt |
13558449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 503 - 621
Target Start/End: Complemental strand, 11658557 - 11658439
Alignment:
| Q |
503 |
tataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgctactcgtgttgcatgtggtccagg |
602 |
Q |
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| T |
11658557 |
tataaaatgagttgactttcgtataaacaggtgatgattgtattgccgtcaaagaaggttcctcttacatcagcgctactcgtattgcttgtggactagg |
11658458 |
T |
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| Q |
603 |
ccatggaataaggttattt |
621 |
Q |
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| T |
11658457 |
tcatgggataaggttattt |
11658439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 493 - 574
Target Start/End: Original strand, 32924748 - 32924829
Alignment:
| Q |
493 |
tatgtgcaattataaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatct |
574 |
Q |
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| T |
32924748 |
tatgtgcaattttaaaatgagttggttttcttataaataggtgatgattgtattgccatcaatggtggctcctcttatatct |
32924829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 619
Target Start/End: Original strand, 2525083 - 2525171
Alignment:
| Q |
531 |
aggtgatgattgtattgccgttaatgggggatcctcttacatctatgctactcgtgttgcatgtggtccaggccatggaataaggttat |
619 |
Q |
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| T |
2525083 |
aggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggttat |
2525171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 617
Target Start/End: Original strand, 2550053 - 2550152
Alignment:
| Q |
518 |
ttttcttgtaagcaggtgatgattgtattgccgttaatgggggatcctcttacatctatgctactcgtgttgcatgtggtccaggccatggaataaggtt |
617 |
Q |
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| T |
2550053 |
ttttcttttaaataggtgacgattgtattgcagtaaatggtggctccacttttatcaatgctactcgggttacttgtggaccaggccatgggataaggtt |
2550152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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