View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18716_low_4 (Length: 545)
Name: NF18716_low_4
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18716_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 30 - 526
Target Start/End: Complemental strand, 52859171 - 52858680
Alignment:
| Q |
30 |
tttagtgcttagcatacgaaaatggagatacgttgaaggtgggcatgttttgagaaaaaagaggcacgtgattgtaacaacaagttgatttaaaagtatt |
129 |
Q |
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| T |
52859171 |
tttagtgcttagcatacgaaaatggagatacgttgaaggtgggcatgttttgagaaaaaagaggcacgtgattgtaacaa---gttgatttaaaagtatt |
52859075 |
T |
|
| Q |
130 |
gtacaagtggggtgtgaggcagcgcatctaatctaaatatccattatatcttgtttgttttttgaataacagtccgtcaaccccacccaaaccaccaact |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52859074 |
gtacaagtggggtgtgaggcagcgcatctaatctaaatatccattatatcttgtttgttttttgaataacagtccctcaaccccacccaaaccaccaact |
52858975 |
T |
|
| Q |
230 |
tgcttcttattcttctaatt-aattaattgaaatcatcaaataccatcttccttcttcaattgtctaattgtcttagtctccgcacacagattaattgat |
328 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52858974 |
tgcttcttattcttctaattaaattaattgaaatcatcaaataccatcttccttcttcaattgtctaattgtcttagtctccgcacacagattaattgat |
52858875 |
T |
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| Q |
329 |
tgagaattgaannnnnnnnnnnnnnnnnnnngtatcgtccaccttcctcatcggcttcttcttcttcctcttcgtctcagcaacaacagagctccatcag |
428 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52858874 |
tgagaattgaa---atcatcatcatcatcatgtatcgtccaccttcctcatcggcttcttcttcttcctcttcgtctcagcaacaacagagctccatcag |
52858778 |
T |
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| Q |
429 |
tcaaacgggtctcacaaggtatggttcagcacctagctctctcctcaacaccacggtggatgccatcataggaggatcacgccttcttcctggaacgg |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52858777 |
tcaaacgggtctcacaaggtatggttcagcacctagctctctcctcaacaccacggtggatgccatcataggaggatcacgccttcttcctggaacgg |
52858680 |
T |
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