View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18716_low_5 (Length: 533)
Name: NF18716_low_5
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18716_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 11157064 - 11156549
Alignment:
| Q |
1 |
aagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctggattgaggaggagttgttggaggcaaagggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11157064 |
aagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctggattgaggaggagttgttggaggcaaagggg |
11156965 |
T |
|
| Q |
101 |
atcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaagtgaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
11156964 |
atcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactggaaatgaaccattttgtaaaagtgaaggtgaacaagtgaata |
11156865 |
T |
|
| Q |
201 |
gaagaggggaaagctttgtgtttttccgaatcctcatctactttcactttcttctgtaccctttgcaagggtaaggcactatatatatcgaccnnnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156864 |
gaagaggggaaagctttgtgtttttccgaatcctcatctactttcactttcttctgtaccctttgcaagggtaaggcactatatatatcgaccttttttt |
11156765 |
T |
|
| Q |
301 |
gtaagagtgaaaaaatacataca--ctagtttatgggggtaggtgtgggtaaacaataaaaagagtaagataattgaaagcacatgaaccttattttata |
398 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156764 |
gtaagattgaaaaaatacaaacactctagtttgtgggggtaggtgtgggtaaacaataaaaagagtaagataattgaaagcacatgaaccttattttata |
11156665 |
T |
|
| Q |
399 |
ctttcttttctgtctctcctttttacccttgaaaatcttcccatacgaaaagaataggcaatagagtattagttttaattacaatgttgattattttgaa |
498 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
11156664 |
ctttctttt-tatctctcctttttacccttgaaaatcttcccatccgaaaagaataggcaatagagtattagttttaattgcaatgttgattattttcaa |
11156566 |
T |
|
| Q |
499 |
ataaaagatgcgcttag |
515 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11156565 |
ataaaagatgcgcttag |
11156549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 11164025 - 11163786
Alignment:
| Q |
1 |
aagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctgg---attgaggaggagttgttggaggcaaag |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| || ||||||||| |||||||| ||||| |
|
|
| T |
11164025 |
aagaaccctaataaagcatatgaaaaaaccctaatagatataagaagagaagaagaagtttgtaacctggtgaatcgaggaggagctgttggagacaaag |
11163926 |
T |
|
| Q |
98 |
gggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaagtga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||||||| | ||| | || |||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
11163925 |
gggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatgaacaagtga |
11163826 |
T |
|
| Q |
198 |
atagaagaggggaaagctttgtgtttttccgaatcctcat |
237 |
Q |
| |
|
|||||||||||||||| || | |||||| ||||||||||| |
|
|
| T |
11163825 |
atagaagaggggaaagtttagcgtttttacgaatcctcat |
11163786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 337 - 408
Target Start/End: Complemental strand, 11175039 - 11174968
Alignment:
| Q |
337 |
gtaggtgtgggtaaacaataaaaagagtaagataattgaaagcacatgaaccttattttatactttcttttc |
408 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
11175039 |
gtaggtgtgggtaaacactaaaaagattaagataattgaaagcacataaaccttattttatgctttcttttc |
11174968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 11176746 - 11176672
Alignment:
| Q |
99 |
ggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccatttt |
173 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| || | ||||||| |||||| || |||||||||||||| |
|
|
| T |
11176746 |
ggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt |
11176672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 4703888 - 4704031
Alignment:
| Q |
94 |
aaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaa |
193 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| || |||||||| |||||| | |||||| |||||||||| ||||||| |||||| |
|
|
| T |
4703888 |
aaaggggatggcatcccatggagattggttaagctgacaaacgtgcatttgaaaaggttcaaccggtaatgaatcattttgtagtagtgaagacgaacaa |
4703987 |
T |
|
| Q |
194 |
gtgaatagaagaggggaaagctttgtgtttttccgaatcctcat |
237 |
Q |
| |
|
||||||||||||||||||| ||| | | ||| ||||||||||| |
|
|
| T |
4703988 |
gtgaatagaagaggggaaatcttcgcggcttttcgaatcctcat |
4704031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University