View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18716_low_8 (Length: 442)
Name: NF18716_low_8
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18716_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 49171311 - 49170896
Alignment:
| Q |
19 |
atctacctataataattttcttagggataacacacaattaggaagagactgagaacattccctactctctgctgcacaaaacaaaacaacatacacgctc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49171311 |
atctacctataataattttcttagggataacacacaattaggaagagactgagaacatttcctactctctgctgcacaaaacaaaacaacatacacgctc |
49171212 |
T |
|
| Q |
119 |
acctcctctaaaagatatgtatagtgccataatataattaatcgccactttgttttcaatttattctacttgagttcatgagtttcattcgtcaatttta |
218 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49171211 |
acctcctctaaaagatctttatagtgccataatataattaatcaccactttgttttcaatttattctacttgagttcatgagtttcattcttcaatttta |
49171112 |
T |
|
| Q |
219 |
gccttgctatttcaaatacatctaaagccattgccaaacacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctattg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49171111 |
gccttgctatttcaaatacatctaaagccattgccaatcacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctcttg |
49171012 |
T |
|
| Q |
319 |
ttagaccagaaaaga-aaaacataaatttgtgattatactctttggcatgtggtcctttctttactatttgcaaacaacaaagttttagagacaaccaag |
417 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49171011 |
ttagaccagaaaagaaaaaacataaatttgtgattatactctttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaag |
49170912 |
T |
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| Q |
418 |
cccttactatattctt |
433 |
Q |
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|||||| ||||||||| |
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| T |
49170911 |
cccttattatattctt |
49170896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 21492387 - 21492308
Alignment:
| Q |
19 |
atctacctataataattttcttagggataacacacaattaggaagagactgagaacattccctactctctgctgcacaaa |
98 |
Q |
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||||| |||||||||||||| ||||||||||| |||||||||||||||| | ||| || |||||| |||||| |||||| |
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| T |
21492387 |
atctagctataataattttcctagggataacatacaattaggaagagaccaataacgtttcctactatctgctacacaaa |
21492308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 44 - 425
Target Start/End: Original strand, 8420829 - 8421210
Alignment:
| Q |
44 |
gataacacacaattaggaagagactgagaacattccctactctctgctgcacaaaacaaaacaacatacacgctcacctcctctaaaagatatgtatagt |
143 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8420829 |
gataacacacaattaggaagagactgagaacatttcctactctctgctgcacaaaacaaaacaacatacacgctcacctcctctaaaagatctgtatagt |
8420928 |
T |
|
| Q |
144 |
gccataatataattaatcgccactttgttttcaatttattctacttgagttcatgagtttcattcgtcaattttagccttgctatttcaaatacatctaa |
243 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8420929 |
gccataatataattaatcaccactttgttttcaatttattctacttgagttcatgagtttcattcttcaattttagccttgctatttcaaatacatctaa |
8421028 |
T |
|
| Q |
244 |
agccattgccaaacacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctattgttagaccagaaaagaaaaacataaa |
343 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
8421029 |
agccattgccaatcacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctcttgttagacctgaaaagaaaaacataaa |
8421128 |
T |
|
| Q |
344 |
tttgtgattatactctttggcatgtggtcctttctttactatttgcaaacaacaaagttttagagacaaccaagcccttact |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
8421129 |
tttgtgattatactctttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagaccttact |
8421210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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