View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18716_low_9 (Length: 406)

Name: NF18716_low_9
Description: NF18716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18716_low_9
NF18716_low_9
[»] chr5 (2 HSPs)
chr5 (15-392)||(24649520-24649894)
chr5 (30-195)||(20143930-20144095)
[»] scaffold0011 (1 HSPs)
scaffold0011 (15-207)||(249142-249334)
[»] chr7 (3 HSPs)
chr7 (15-207)||(31599714-31599906)
chr7 (15-150)||(40751883-40752018)
chr7 (32-208)||(13851030-13851206)
[»] chr3 (3 HSPs)
chr3 (28-207)||(41736992-41737170)
chr3 (91-207)||(11306563-11306679)
chr3 (70-202)||(4994799-4994931)
[»] chr1 (1 HSPs)
chr1 (18-203)||(27894856-27895041)
[»] chr2 (3 HSPs)
chr2 (20-203)||(19176808-19176991)
chr2 (70-203)||(38085559-38085692)
chr2 (29-136)||(10235371-10235478)
[»] scaffold0015 (1 HSPs)
scaffold0015 (28-177)||(5353-5502)
[»] chr8 (2 HSPs)
chr8 (54-145)||(20695574-20695665)
chr8 (52-145)||(16683694-16683787)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 392
Target Start/End: Complemental strand, 24649894 - 24649520
Alignment:
Q  15 aatcacaaccaataatgcaagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaac 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24649894 aatcacaaccaataatgcaagaaatgtcgtcaaaaggaatgatgcgccgacggaaaaggttatctttagttgggattcgattgcggagcaaacgccaaac 24649795  T
Q  115 aaagacagagaccttaagcggagcttccttcacccacacatcatcaaaccgaccacgttcggaaggcacacctgacgtcgtgagataagcatatcatgaa 214  Q
    ||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||    
T  24649794 aa---cagagaccttaagcggagcttccttcacccacacatcatcaaaccaaccacgttcggaaggcacatctggcgtcgtgagataagcatatcataaa 24649698  T
Q  215 aggttaaaaagtaaattataaaataactaagaattatattttacccttttaccaagtgagctaaagggacaaacac--aaccaagattaatttaagaaac 312  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||    
T  24649697 aggttaaaaagtaaattataaaataac-aagaatta-attttacccttttaccaagtgagctaaagggacaaacacaaaaccaaaattaatttaagaaac 24649600  T
Q  313 ctttacaaagtgtggtaaaatgacaagcacatcacattcatgtttttaagtgtcaaaaatattatattgttttcataatt 392  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24649599 ctttacaaagtgtggtaaaattacaagtacatcacattcatgtttttaagtgtcaaaaatattatattgttttcataatt 24649520  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 20143930 - 20144095
Alignment:
Q  30 tgcaagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaacaaagacagagacctt 129  Q
    ||||| || |||||||||||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||| |  |  ||| |||||||||| |||||    
T  20143930 tgcaataagtgtcgtcgaaagaaatgatgcgctgatggaaaaggttgtctttagtagggattcgattgcggaggagtcgtcaagcaaagacagaaacctt 20144029  T
Q  130 aagcggagcttccttcacccacacatcatcaaaccgaccacgttcggaaggcacacctgacgtcgt 195  Q
    ||||||| |||  |||| ||||||||| ||||| || ||||| |||||| | ||| ||| ||||||    
T  20144030 aagcggaacttgtttcaaccacacatcctcaaatcggccacgctcggaatgaacatctggcgtcgt 20144095  T

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Target: scaffold0011 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 249334 - 249142
Alignment:
Q  15 aatcacaaccaataatgcaagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaac 114  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  249334 aatcacagccaacaatgcaagaaatgtcgtcgaaaggaatgatgcgccgacggaagaggttatctttagttgggattcgattgcggagcaaacgccaaac 249235  T
Q  115 aaagacagagaccttaagcggagcttccttcacccacacatcatcaaaccgaccacgttcggaaggcacacctgacgtcgtgagataagcata 207  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  249234 aaagatagagaccttaagcagagcttccttcacccacacatcatcaaaccgatcacgttcggaaggcacatctggcgtcgtgagataagcata 249142  T

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Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 31599714 - 31599906
Alignment:
Q  15 aatcacaaccaataatgcaagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaac 114  Q
    |||||||||||  ||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||||| |  | ||||||    
T  31599714 aatcacaaccagcaatgcaagatatgtcgtcgagaggaatgatgcgccgacggaagaggttatctttagttggcattcgattgcggagaagtcgccaaac 31599813  T
Q  115 aaagacagagaccttaagcggagcttccttcacccacacatcatcaaaccgaccacgttcggaaggcacacctgacgtcgtgagataagcata 207  Q
    ||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31599814 aaagatagaaaccttaagcagagcttccttcacccacacatcgtcaaaccgaccacgttcggaaggcacacctggcgtcgtgagataagcata 31599906  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 40752018 - 40751883
Alignment:
Q  15 aatcacaaccaataatgcaagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaac 114  Q
    ||||||| |||  ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||| |  | ||||||    
T  40752018 aatcacagccagcaatgcaagatatgtcgtcgaaaggaatgatgcgccgacggaagaggttatctttagttggaattcgattgcagagaagtcgccaaac 40751919  T
Q  115 aaagacagagaccttaagcggagcttccttcaccca 150  Q
    ||||| ||||||||||||||||||||||||||||||    
T  40751918 aaagatagagaccttaagcggagcttccttcaccca 40751883  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 13851206 - 13851030
Alignment:
Q  32 caagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaacaaagacagagaccttaa 131  Q
    |||||||||| |||  ||| |||||| |||| | ||| |||||| ||||||||||| ||||||||| | || |  | |||| |||| |||||||||||||    
T  13851206 caagaaatgttgtccgaagaaatgattcgcctacggagaaggttgtctttagttggaattcgattgtgaaggagtctccaagcaaacacagagaccttaa 13851107  T
Q  132 gcggagcttccttcacccacacatcatcaaaccgaccacgttcggaaggcacacctgacgtcgtgagataagcatat 208  Q
     |||| ||| ||||  ||||| ||| || |||  |||||| || ||||  ||||||| ||| |||||||||| ||||    
T  13851106 ccggaacttgcttcttccacaaatcgtcgaacataccacgctccgaagagacacctgccgttgtgagataagtatat 13851030  T

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Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 41736992 - 41737170
Alignment:
Q  28 aatgcaagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaacaaagacagagacc 127  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||| |  | |||| ||||||||||||||    
T  41736992 aatgcaagaaatgtcgtcgaaaggaatgatgcgccgacggaaaaggttgtctttagttgggattcggttgtggagaagtcgccaa-caaagacagagacc 41737090  T
Q  128 ttaagcggagcttccttcacccacacatcatcaaaccgaccacgttcggaaggcacacctgacgtcgtgagataagcata 207  Q
    ||||||||| ||||||||| ||||||||||||||| ||||| |  |||||||| ||||||| ||||||| ||||||||||    
T  41737091 ttaagcggaacttccttcagccacacatcatcaaatcgaccgcactcggaaggaacacctggcgtcgtgggataagcata 41737170  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 11306563 - 11306679
Alignment:
Q  91 tcgattgcggagcaaacaccaaacaaagacagagaccttaagcggagcttccttcacccacacatcatcaaaccgaccacgttcggaaggcacacctgac 190  Q
    |||||||||||| |  | ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |    
T  11306563 tcgattgcggagaagtcgccaaacaaagatagagaccttaagcggagcttccttcacccatacatcatcaaaccgcccacgttcggaaggcacacctggc 11306662  T
Q  191 gtcgtgagataagcata 207  Q
    |||||||||||||||||    
T  11306663 gtcgtgagataagcata 11306679  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 4994931 - 4994799
Alignment:
Q  70 aaggttatctttagttgggattcgattgcggagcaaacaccaaacaaagacagagaccttaagcggagcttccttcacccacacatcatcaaaccgacca 169  Q
    |||||| || |||||||||| ||||||||| || |  ||||||||||| |||||||||||||||||| ||| |||   ||||| ||| ||||||  ||||    
T  4994931 aaggttgtccttagttgggagtcgattgcgaaggagtcaccaaacaaatacagagaccttaagcggaacttgcttattccacaaatcgtcaaacatacca 4994832  T
Q  170 cgttcggaaggcacacctgacgtcgtgagataa 202  Q
    |   ||||||| | ||  |||||||||||||||    
T  4994831 ctcgcggaaggaatactggacgtcgtgagataa 4994799  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 27895041 - 27894856
Alignment:
Q  18 cacaaccaataatgcaagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaacaaa 117  Q
    ||||||||  |||||||||| |||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||| |  | |||| ||||    
T  27895041 cacaaccagcaatgcaagaagtgtcgtcgaaagtaatgaggcgccgacggaaaaggttgtctttagttgggattcgattgcggaggagtcgccaagcaaa 27894942  T
Q  118 gacagagaccttaagcggagcttccttcacccacacatcatcaaaccgaccacgttcggaaggcacacctgacgtcgtgagataag 203  Q
    |||||||| |||||||||| ||| ||||  ||||||||| || ||||| || || |||||| | ||| ||| |||||| |||||||    
T  27894941 gacagagatcttaagcggaacttgcttctgccacacatcctcgaaccggccgcgctcggaatggacatctggcgtcgttagataag 27894856  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 19176991 - 19176808
Alignment:
Q  20 caaccaataatgcaagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaacaaaga 119  Q
    |||||| ||||||||||| |||||||   ||||||||| || | | | | |||||| ||||||||||||||||||||||| || || | |||||||||||    
T  19176991 caaccagtaatgcaagaagtgtcgtcaggaggaatgatacgtctacgtataaggttgtctttagttgggattcgattgcgaagaaatcgccaaacaaaga 19176892  T
Q  120 cagagaccttaagcggagcttccttcacccacacatcatcaaaccgaccacgttcggaaggcacacctgacgtcgtgagataag 203  Q
    ||||||  ||||||||| ||| | ||  ||| | |||||||||||| ||||| |||||| | |||  || ||||||||||||||    
T  19176891 cagagattttaagcggaacttgcatcttccaaaaatcatcaaaccggccacgctcggaatggacatttggcgtcgtgagataag 19176808  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 38085559 - 38085692
Alignment:
Q  70 aaggttatctttagttgggattcgattgcggagcaaacaccaaacaaagacagagaccttaagcggagcttccttcacccacacatcatcaaaccgacca 169  Q
    |||||| ||||||||||| || ||||||||||| | || |||| |||| | ||| |||||||||||| ||| ||||  ||||| ||| |||||| | |||    
T  38085559 aaggttgtctttagttggaatgcgattgcggagtagacgccaagcaaaaatagaaaccttaagcggaacttgcttcctccacaaatcgtcaaacaggcca 38085658  T
Q  170 cg-ttcggaaggcacacctgacgtcgtgagataag 203  Q
    || | |||||||  |||||||||||||||||||||    
T  38085659 cgctccggaagg-tcacctgacgtcgtgagataag 38085692  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 10235371 - 10235478
Alignment:
Q  29 atgcaagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaacaaagacagagacct 128  Q
    ||||||||| ||||||||| |||||||||  ||| | | | |||||| || |||||||||| ||||||||| || |    ||||||||| ||||||||||    
T  10235371 atgcaagaagtgtcgtcgataggaatgatatgcctacgaataaggttgtccttagttgggagtcgattgcgaaggagttgccaaacaaatacagagacct 10235470  T
Q  129 taagcgga 136  Q
    ||||||||    
T  10235471 taagcgga 10235478  T

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Target: scaffold0015 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 5353 - 5502
Alignment:
Q  28 aatgcaagaaatgtcgtcgaaaggaatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaacaaagacagagacc 127  Q
    |||| ||||| |||||||||||||||| ||||||||| | |||||||| ||||||||||| ||  ||||| |||| |  | |||  ||||||| ||||||    
T  5353 aatgtaagaagtgtcgtcgaaaggaatcatgcgccgacgaaaaaggttgtctttagttggaatgtgattgtggagaagtcgccaggcaaagaccgagacc 5452  T
Q  128 ttaagcggagcttccttcacccacacatcatcaaaccgaccacgttcgga 177  Q
    ||||||| | ||| ||||| |||||||||  ||||||| ||||| |||||    
T  5453 ttaagcgaaacttgcttcagccacacatccacaaaccggccacggtcgga 5502  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 20695665 - 20695574
Alignment:
Q  54 tgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaacaaagacagagaccttaagcggagcttccttc 145  Q
    ||||||||| | ||| |||||| |||||||| || |||||||||||||| |  | ||||||||| ||| |||||||||||||| ||| ||||    
T  20695665 tgatgcgcctacggagaaggttgtctttagtgggaattcgattgcggagaagtcgccaaacaaaaacaaagaccttaagcggaacttgcttc 20695574  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 16683787 - 16683694
Alignment:
Q  52 aatgatgcgccgatggaaaaggttatctttagttgggattcgattgcggagcaaacaccaaacaaagacagagaccttaagcggagcttccttc 145  Q
    ||||||||||| ||||| |||||| |||||||| || || |||||| |||| |  | ||||||||| ||| | |||||||||||| ||| ||||    
T  16683787 aatgatgcgcctatggagaaggttgtctttagtgggaatgcgattgtggagaagtcgccaaacaaatacatataccttaagcggaacttgcttc 16683694  T

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