View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_high_11 (Length: 460)
Name: NF18717_high_11
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 31 - 446
Target Start/End: Original strand, 43477177 - 43477607
Alignment:
| Q |
31 |
tgtccaagaatatttgataaaaaagccaaaagaaatacaaggtaggtctgcgtggcttaatgattattgagctggtaaacttttgctcaatctaatagtc |
130 |
Q |
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| T |
43477177 |
tgtccaaaaagatttgataaaaaagccaaaagaaatacaaggtaggtctgcgtggcttaatgattattgagctggtaaacttttgctcaatctaatagtc |
43477276 |
T |
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| Q |
131 |
atactcataactaaaacaaaatccgtt-----------taattataatgaacaatctcatgtattttccactaactaacaactaagacattcttttcttt |
219 |
Q |
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| T |
43477277 |
atactcataactaaaacaaaatccgttaaaaaaaaacttaattataatgaacaatctcatgtattttccactaactaacaactaagacattcttttcttt |
43477376 |
T |
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| Q |
220 |
tcaaaaaacaaagacattcttaacgaagggttaacctagattctgaagacaaatagaatcattattgtatg----ataagaaagcgattatgacaaaata |
315 |
Q |
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| T |
43477377 |
tcaaaaaacaaagacattcttaacgaagggttaacctagattctgaagacaaatagaatcattattgtatggtaattaagaaagcgattatgacaaaata |
43477476 |
T |
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| Q |
316 |
tattgaatataatggatagggctagctagctaatttagatccaatcctctaacagataaggctaagttttatccaatcctttatctctataattgtcaca |
415 |
Q |
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| T |
43477477 |
tattgaatataatggatagggctagctagctaatttagatccaatcctctaacagataaggctaagttttatccaatcctttatctctataattgtcaca |
43477576 |
T |
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| Q |
416 |
tttatctgtgaatgctctggccctctttaaa |
446 |
Q |
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| T |
43477577 |
tttatctgtgaatgctctggccctctttaaa |
43477607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 43477740 - 43477788
Alignment:
| Q |
369 |
agataaggctaagttttatccaatcctttatctctataattgtcacatt |
417 |
Q |
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| T |
43477740 |
agataaggctgagttttatccaatcctttatctctataattgtcacatt |
43477788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 43468316 - 43468363
Alignment:
| Q |
226 |
aacaaagacattcttaacgaagggttaacctagattctgaagacaaat |
273 |
Q |
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| T |
43468316 |
aacacagacattcttaaagaagggttaacctaggttctgaagacaaat |
43468363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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