View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18717_high_15 (Length: 431)

Name: NF18717_high_15
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18717_high_15
NF18717_high_15
[»] chr5 (2 HSPs)
chr5 (1-418)||(4756638-4757055)
chr5 (60-418)||(4748803-4749158)


Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 4757055 - 4756638
Alignment:
Q  1 ttgagtgctttatggaatgcaaatccagtgagattgatggcgagtgatttcattcccttaagcaaatcaatgtacaaattttcaaccaaaccaaggtcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4757055 ttgagtgctttatggaatgcaaatccagtgagattgatggcgagtgatttcattcccttaagcaaatcaatgtacaaattttcaaccaaaccaaggtcca 4756956  T
Q  101 cgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4756955 cgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaa 4756856  T
Q  201 ctcttctaaatgtttcacagcactatcctcaatgagaccaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgt 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4756855 ctcttctaaatgtttcacagcactatcctcaatgagactaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgt 4756756  T
Q  301 ttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4756755 ttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaa 4756656  T
Q  401 ccttacgacatgtctctg 418  Q
    ||||||||||||||||||    
T  4756655 ccttacgacatgtctctg 4756638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 60 - 418
Target Start/End: Complemental strand, 4749158 - 4748803
Alignment:
Q  60 aagcaaatcaatgtacaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctc 159  Q
    ||||||||||||||||||||  ||||||||| |||||||  | || ||||||||||| |||| |||||  | ||||||||| |||||||  |||||| |     
T  4749158 aagcaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaactttttg 4749059  T
Q  160 atctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagaccaatataagttgacaatgctt 259  Q
      |||||| |||||||||   ||||||||| |||||||| | |||||||||| ||||||  || |||| || ||||||||||||||| |  ||||   ||    
T  4749058 gcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaa---tt 4748962  T
Q  260 cgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttga 359  Q
    ||| ||||||||| ||||| ||| |||    || ||||||||| || || | | |||| ||||||||||||||| |||| |||| |||  |||| | |||    
T  4748961 cgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctga 4748862  T
Q  360 atgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctctg 418  Q
    |  |||||||||   ||||||||  || |||||  |||| || ||||||||||||||||    
T  4748861 agcagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgtctctg 4748803  T

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