View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18717_high_23 (Length: 314)

Name: NF18717_high_23
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18717_high_23
NF18717_high_23
[»] chr6 (5 HSPs)
chr6 (17-152)||(4261081-4261216)
chr6 (18-129)||(4267980-4268091)
chr6 (122-175)||(4300808-4300861)
chr6 (30-91)||(4300929-4300990)
chr6 (171-217)||(4267938-4267984)
[»] chr5 (8 HSPs)
chr5 (23-144)||(24102220-24102341)
chr5 (123-217)||(24106528-24106622)
chr5 (126-175)||(24106747-24106796)
chr5 (27-68)||(24106453-24106494)
chr5 (121-204)||(24047454-24047537)
chr5 (27-69)||(24044680-24044722)
chr5 (168-217)||(24044766-24044815)
chr5 (168-217)||(24052948-24052997)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 4261216 - 4261081
Alignment:
Q  17 cataggtaccgcagaaatgttgattgattaggaatatagtattttcctaactttgcaaacgaaatatggattcgtactatgcacataaagttagatgttg 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  4261216 catagataccgcagaaatgttgattgattaggaatatagtattttcctaacttcgcaaacgaaatatggattcgtactatgcacttaaagttagatgttg 4261117  T
Q  117 attgattggaaattttaaagtaatgtttggatattt 152  Q
    |||||||||||||||||||||||||||| |||||||    
T  4261116 attgattggaaattttaaagtaatgtttagatattt 4261081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 4268091 - 4267980
Alignment:
Q  18 ataggtaccgcagaaatgttgattgattaggaatatagtattttcctaactttgcaaacgaaatatggattcgtactatgcacataaagttagatgttga 117  Q
    |||| |||||| | |||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  4268091 atagataccgcggcaatgttgattgattagaaatataatattttcctaacttcgcaaacgaaatatggattcgtactatgcacttaaatttagatgttga 4267992  T
Q  118 ttgattggaaat 129  Q
    ||||||||||||    
T  4267991 ttgattggaaat 4267980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 4300861 - 4300808
Alignment:
Q  122 ttggaaattttaaagtaatgtttggatattttaggctataaggatatttgaaat 175  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  4300861 ttggaaattttaaagtaatgtttagatattttaggctgtaaggatatttgaaat 4300808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 4300990 - 4300929
Alignment:
Q  30 gaaatgttgattgattaggaatatagtattttcctaactttgcaaacgaaatatggattcgt 91  Q
    ||||||||||||||||||||||||| || ||||||| ||| ||||| |||||||||||||||    
T  4300990 gaaatgttgattgattaggaatatattagtttcctatcttcgcaaatgaaatatggattcgt 4300929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 4267984 - 4267938
Alignment:
Q  171 gaaatggtcatcaaatggaaatttaaagtaatgttagaaattttgaa 217  Q
    ||||||||||||| |  ||||||||||||||||||||||| ||||||    
T  4267984 gaaatggtcatcagacagaaatttaaagtaatgttagaaaatttgaa 4267938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 24102220 - 24102341
Alignment:
Q  23 taccgcagaaatgttgattgattaggaatatagtattttcctaactttgcaaacgaaatatggattcgtactatgcacataaagttagatgttgattgat 122  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  24102220 taccgcggaaatgttgattgattacgaatataatattttcctaacttcgcaaacgaaatatggattcgtactatgcacttaaaattagatgttgattgat 24102319  T
Q  123 tggaaattttaaagtaatgttt 144  Q
    |||||||||||| |||||||||    
T  24102320 tggaaattttaatgtaatgttt 24102341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 24106528 - 24106622
Alignment:
Q  123 tggaaattttaaagtaatgtttggatattttaggctataaggatatttgaaatggtcatcaaatggaaatttaaagtaatgttagaaattttgaa 217  Q
    |||||||||||||||||||||  |||||||||| |  ||||||||||||||| ||| |||| || ||||| |||||||||||| |||| ||||||    
T  24106528 tggaaattttaaagtaatgttaagatattttagaccgtaaggatatttgaaagggttatcagatagaaatgtaaagtaatgttcgaaaatttgaa 24106622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 24106747 - 24106796
Alignment:
Q  126 aaattttaaagtaatgtttggatattttaggctataaggatatttgaaat 175  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  24106747 aaattttaaagtaatgtttagatattttaggctgcaaggatatttgaaat 24106796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 24106453 - 24106494
Alignment:
Q  27 gcagaaatgttgattgattaggaatatagtattttcctaact 68  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  24106453 gcagaaatgttgattgattaggaatataatattttcttaact 24106494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 24047454 - 24047537
Alignment:
Q  121 attggaaattttaaagtaatgtttggatattttaggctataaggatatttgaaatggtcatcaaatggaaatttaaagtaatgt 204  Q
    |||||||| |||||||| |||||| || |||  | ||| ||||||||| |||||||||||||| || ||||||  |||||||||    
T  24047454 attggaaaatttaaagtgatgtttagaaattgaaagctgtaaggatatatgaaatggtcatcagatagaaattcgaagtaatgt 24047537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 24044680 - 24044722
Alignment:
Q  27 gcagaaatgttgattgattaggaatatagtattttcctaactt 69  Q
    |||||||||||||||||||||||||||  |||||||| |||||    
T  24044680 gcagaaatgttgattgattaggaatattatattttcccaactt 24044722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 24044766 - 24044815
Alignment:
Q  168 tttgaaatggtcatcaaatggaaatttaaagtaatgttagaaattttgaa 217  Q
    |||||||||||||||| |  ||||||||||||||| ||||||| ||||||    
T  24044766 tttgaaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaa 24044815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 24052948 - 24052997
Alignment:
Q  168 tttgaaatggtcatcaaatggaaatttaaagtaatgttagaaattttgaa 217  Q
    |||||||||||||||| |  |||||||||||||| |||||||| ||||||    
T  24052948 tttgaaatggtcatcagaaagaaatttaaagtaaagttagaaaatttgaa 24052997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University