View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_high_28 (Length: 250)
Name: NF18717_high_28
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 34888204 - 34888334
Alignment:
| Q |
9 |
caagaatatgagcgagagttgtcctaaaataattgtgcaaatatctgatatcgttttcattgaaatacttttttatgaaccaatcactaaacaaaacaaa |
108 |
Q |
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| T |
34888204 |
caagagtatgagtgagagttgttctaaaataattgtacaaatatcttgtatcgttttcattgaaatacttttttatgaaccaatcactaaagaaaacaaa |
34888303 |
T |
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| Q |
109 |
ttgttttaccataagtgaagtgaaggtcaaa |
139 |
Q |
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| T |
34888304 |
ttgttttaccatgagtgaagtgaaggtcaaa |
34888334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 34888609 - 34888713
Alignment:
| Q |
148 |
gtgcagttggtcaattgggttccacctaacgagaatcaagtggctttaaacgttgatgagagttatctctgaagctctggtagggtatg--ttggaggtt |
245 |
Q |
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| T |
34888609 |
gtgcaattggtcaattgggttccacctaacgagaatcaagtggctttaaacgttgatgagagttatctcggaagctctggtagggcatgttttggaggtt |
34888708 |
T |
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| Q |
246 |
taatt |
250 |
Q |
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||||| |
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| T |
34888709 |
taatt |
34888713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 34034107 - 34034175
Alignment:
| Q |
60 |
cgttttcattgaaatacttttttatgaaccaatcactaaacaaaacaaattgttttaccataagtgaag |
128 |
Q |
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| T |
34034107 |
cgttttcattgaaatactattttatgagccaatcactaaacacaacaaattgttttaccatgagtgaag |
34034175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 34034457 - 34034514
Alignment:
| Q |
148 |
gtgcagttggtcaattgggttccacctaacgagaatcaagtggctttaaacgttgatg |
205 |
Q |
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| T |
34034457 |
gtgcagttggtcaattgggttccaccttacgagaatcaagtagttttgaatgttgatg |
34034514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 45632485 - 45632526
Alignment:
| Q |
168 |
tccacctaacgagaatcaagtggctttaaacgttgatgagag |
209 |
Q |
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| T |
45632485 |
tccacctaacgagaatcaagtggctttaaacgttgacgagag |
45632526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 2658768 - 2658727
Alignment:
| Q |
168 |
tccacctaacgagaatcaagtggctttaaacgttgatgagag |
209 |
Q |
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| T |
2658768 |
tccacctaacgagaatcaagtggctttaaacgttgacgagag |
2658727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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