View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18717_high_3 (Length: 695)

Name: NF18717_high_3
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18717_high_3
NF18717_high_3
[»] chr5 (3 HSPs)
chr5 (9-679)||(1029855-1030524)
chr5 (136-215)||(17753698-17753780)
chr5 (151-225)||(32056129-32056202)
[»] chr6 (2 HSPs)
chr6 (145-225)||(20795554-20795635)
chr6 (187-225)||(30475210-30475248)
[»] chr7 (1 HSPs)
chr7 (142-221)||(45971653-45971733)
[»] chr8 (2 HSPs)
chr8 (137-168)||(41151974-41152005)
chr8 (134-168)||(9383697-9383731)
[»] chr4 (2 HSPs)
chr4 (148-238)||(24349388-24349480)
chr4 (185-225)||(23211605-23211645)
[»] chr1 (2 HSPs)
chr1 (137-166)||(36646835-36646864)
chr1 (137-169)||(32663876-32663908)


Alignment Details
Target: chr5 (Bit Score: 620; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 9 - 679
Target Start/End: Original strand, 1029855 - 1030524
Alignment:
Q  9 agcataggcaaaaagagattccatctgaaagataacacacttcaatggcaatgaaacatgtctctaaagatttaaaagtatatctaacttcatataacaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1029855 agcataggcaaaaagagattccatctgaaagataacacacttcaatggcaatgaaacatgtctctaaagatttacaagtatatctaacttcatataacaa 1029954  T
Q  109 cctttgacataaagaaaaaacaaactagagttgtgttatttgaacatcaaaatacagacaccaatgtgacacaatatatgtttatctctctatctcttac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1029955 cctttgacataaagaaaaaacaaactagagttgtgttatttgaacatcaaaattcagacaccaatgtgacacaatatatgtttatctctctatctcttac 1030054  T
Q  209 tttttatcttctacaacctatacgcattaatatacggtatacataaaaactaaaggacaacgatttgacatgaaaatataatttctcttcaaactaacat 308  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1030055 tttttatcttctacaacctatatgcattaatatacggtatacataaaaactaaaggacaacgatttgacatgaaaatatcatttctcttcaaactaacat 1030154  T
Q  309 aacatggcacattgaatacctatcgaacatacatgtatatatacatacttacgtcatgtcggtaatttcatttcggatggaaccggaagcagaaccataa 408  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1030155 aacatggcacattgaatacctatggaacatgcatgtatatatacatacttacgtcatgtcggtaatttcatttcggatggaaccggaagcagaaccataa 1030254  T
Q  409 ctgcgactatatggatgtaaactgtttaaagcagcacctaaacattcaaatttggcttgaaagtacgggcaaaattgctccttataattacctgatatac 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1030255 ctgcgactatatggatgtaaactgtttaaagcagcacctaaacattcaaatttggcttgaaagtacgggcaaaattgctccttataattacctgatatac 1030354  T
Q  509 caacataatagcaatacgtaagtattcgtcggaattcaaacataataaaaaatatatat--aaattgagaaaaattgatttgacggtgaacttaggagct 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  1030355 caacataatagcaatacgtaagtattcgtcggaattcaaacataataaaaaatatatataaaaattgagaaaaattgatttgacggtgaacttaggagct 1030454  T
Q  607 cacctgtaagagaacgagcgaggaggttggagttgcggcgaagaagaagaaaggaagccattgttgtaggaaa 679  Q
    |||| ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  1030455 caccggtaagagaacgagcgaggaggttggagttgcggc---gaagaagaaaggaagccattgttgtaggaaa 1030524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 17753698 - 17753780
Alignment:
Q  136 gagttgtgttatttgaacatcaaaatacagacacc-aatgtgacacaatatatgtttatctc--tctatctcttactttttat 215  Q
    ||||||||||||||||||||||||| ||| || ||  ||||||||| |||||||| ||||||  ||| |||||||||||||||    
T  17753698 gagttgtgttatttgaacatcaaaaaacatacgccgtatgtgacaccatatatgtctatctctatctctctcttactttttat 17753780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 32056129 - 32056202
Alignment:
Q  151 aacatcaaaatacagacacca-atgtgacacaatatatgtttatctctctatctcttactttttatcttctacaac 225  Q
    |||||||||||||| | | || |||| |||| ||||||||||||||||  ||||  ||||||||||||||||||||    
T  32056129 aacatcaaaatacaaaaatcatatgtaacaccatatatgtttatctct--atcttctactttttatcttctacaac 32056202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 20795635 - 20795554
Alignment:
Q  145 tatttgaacatcaaaatacagacaccaatgtgacacaatatatgtttatctc--tctatctcttactttttatcttctacaac 225  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||||||||||  ||| || ||||||||| ||||| ||||||    
T  20795635 tatttgaacatcaaaatacagacacc-gtgtgacacaatatgtgtttatctctatctctcacttacttttgatcttttacaac 20795554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 30475248 - 30475210
Alignment:
Q  187 tgtttatctctctatctcttactttttatcttctacaac 225  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  30475248 tgtttatctctatatctcttactttttatcttttacaac 30475210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 45971653 - 45971733
Alignment:
Q  142 tgttatttgaacatcaaaatacagacacc-aatgtgacacaatatatgtttatctctctatctcttactttttatcttcta 221  Q
    ||||||||||||||||||||||| | |||  ||||||||   ||||||||||||||| | |||| ||||||| ||||||||    
T  45971653 tgttatttgaacatcaaaatacaaataccgtatgtgacatcttatatgtttatctctatctctcatacttttcatcttcta 45971733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 41151974 - 41152005
Alignment:
Q  137 agttgtgttatttgaacatcaaaatacagaca 168  Q
    ||||||||||||||||||||||||||||||||    
T  41151974 agttgtgttatttgaacatcaaaatacagaca 41152005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 9383697 - 9383731
Alignment:
Q  134 tagagttgtgttatttgaacatcaaaatacagaca 168  Q
    ||||||||||||||||||| |||||||||||||||    
T  9383697 tagagttgtgttatttgaatatcaaaatacagaca 9383731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 24349388 - 24349480
Alignment:
Q  148 ttgaacatcaaaatacagacaccaatgtgacacaatatatgtttatctc--tctatctcttactttttatcttctacaacctatacgcattaa 238  Q
    ||||||||||||||| | ||||| || ||| ||  ||||||||||||||  ||| ||| |||||| ||||||| |||||| ||||| ||||||    
T  24349388 ttgaacatcaaaatataaacacctatttgatactgtatatgtttatctccatctttcttttacttattatcttatacaacttatacacattaa 24349480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 23211605 - 23211645
Alignment:
Q  185 tatgtttatctctctatctcttactttttatcttctacaac 225  Q
    |||||||||||||   |||||||||||||||||||||||||    
T  23211605 tatgtttatctctaactctcttactttttatcttctacaac 23211645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 36646864 - 36646835
Alignment:
Q  137 agttgtgttatttgaacatcaaaatacaga 166  Q
    ||||||||||||||||||||||||||||||    
T  36646864 agttgtgttatttgaacatcaaaatacaga 36646835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 32663876 - 32663908
Alignment:
Q  137 agttgtgttatttgaacatcaaaatacagacac 169  Q
    ||||||||||||||||||||||||||| |||||    
T  32663876 agttgtgttatttgaacatcaaaatactgacac 32663908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University