View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_high_32 (Length: 235)
Name: NF18717_high_32
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 12055492 - 12055275
Alignment:
| Q |
3 |
gttccctttaacgagtccacagacatgggaattcccgctatcaatatcttcgataacgggtccatgatagagtcgtttaaaggaaacaatagtacttgaa |
102 |
Q |
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| T |
12055492 |
gttccctttaacgagtccgcagacatgggaattcccgctatcgatatcttcgataacgggtccatgatagagtcgtttaaaggaaacaatagtacttgaa |
12055393 |
T |
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| Q |
103 |
tttgaagagttagaaaatctccaacaaacgatgattgaatttgaagaatttgatgatgatgttaaaccacataaaaaaccatttccaccaacaatttgag |
202 |
Q |
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| T |
12055392 |
tttgaagagttagaaaatctccaacatacgatgattgaatttgaagaatttgatgatgatgttaaaccacata-aaaaccatttccaccaacaatttgag |
12055294 |
T |
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| Q |
203 |
aatatgaaacattagaatt |
221 |
Q |
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||||||||||||||||||| |
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| T |
12055293 |
aatatgaaacattagaatt |
12055275 |
T |
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