View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18717_high_36 (Length: 204)

Name: NF18717_high_36
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18717_high_36
NF18717_high_36
[»] chr6 (10 HSPs)
chr6 (24-204)||(5999277-5999457)
chr6 (24-173)||(8576516-8576674)
chr6 (24-173)||(35167916-35168074)
chr6 (24-173)||(28581914-28582074)
chr6 (24-173)||(34435003-34435161)
chr6 (43-173)||(32292619-32292743)
chr6 (85-173)||(10788336-10788426)
chr6 (24-173)||(7622130-7622288)
chr6 (85-173)||(642331-642419)
chr6 (96-173)||(10409219-10409296)
[»] chr1 (15 HSPs)
chr1 (24-173)||(48379294-48379452)
chr1 (24-173)||(31585434-31585592)
chr1 (24-173)||(47140554-47140712)
chr1 (24-173)||(29678522-29678680)
chr1 (24-173)||(17562987-17563145)
chr1 (24-173)||(38264525-38264683)
chr1 (85-173)||(25294198-25294286)
chr1 (24-164)||(36728955-36729104)
chr1 (24-175)||(31292958-31293118)
chr1 (24-173)||(19884610-19884768)
chr1 (36-170)||(2192002-2192145)
chr1 (85-164)||(25987165-25987244)
chr1 (132-173)||(15378698-15378739)
chr1 (24-73)||(15378770-15378819)
chr1 (120-173)||(17145512-17145565)
[»] chr3 (11 HSPs)
chr3 (24-173)||(13825674-13825832)
chr3 (24-173)||(25874911-25875069)
chr3 (24-173)||(4127766-4127925)
chr3 (85-173)||(12148798-12148886)
chr3 (85-173)||(21287881-21287969)
chr3 (115-173)||(5294986-5295044)
chr3 (24-173)||(27926827-27926985)
chr3 (24-173)||(48251851-48252009)
chr3 (85-173)||(36584162-36584250)
chr3 (24-62)||(21287983-21288021)
chr3 (24-71)||(26187804-26187851)
[»] chr2 (11 HSPs)
chr2 (24-173)||(13626501-13626659)
chr2 (24-173)||(5938501-5938659)
chr2 (24-143)||(5704399-5704527)
chr2 (24-173)||(5109974-5110131)
chr2 (27-173)||(42625222-42625376)
chr2 (85-173)||(13807338-13807426)
chr2 (24-150)||(31576151-31576286)
chr2 (115-173)||(45151526-45151584)
chr2 (85-173)||(31604598-31604686)
chr2 (24-84)||(45458588-45458648)
chr2 (24-62)||(45151442-45151480)
[»] chr4 (15 HSPs)
chr4 (24-173)||(41039099-41039257)
chr4 (24-173)||(23626621-23626779)
chr4 (24-173)||(38951387-38951545)
chr4 (85-173)||(8819575-8819663)
chr4 (24-173)||(51356948-51357105)
chr4 (24-168)||(19841513-19841666)
chr4 (27-173)||(42555097-42555243)
chr4 (85-173)||(40572168-40572254)
chr4 (97-173)||(22278076-22278152)
chr4 (101-173)||(40715136-40715208)
chr4 (94-165)||(36465096-36465167)
chr4 (113-173)||(24916616-24916676)
chr4 (118-172)||(55710059-55710113)
chr4 (64-128)||(29116861-29116926)
chr4 (24-84)||(17120487-17120547)
[»] chr8 (9 HSPs)
chr8 (24-173)||(7987430-7987588)
chr8 (24-173)||(36583093-36583251)
chr8 (24-167)||(7968638-7968790)
chr8 (85-173)||(8227502-8227590)
chr8 (86-173)||(11481199-11481286)
chr8 (24-173)||(31005782-31005940)
chr8 (85-155)||(9765276-9765346)
chr8 (97-173)||(6870773-6870849)
chr8 (24-153)||(13355588-13355726)
[»] chr5 (11 HSPs)
chr5 (24-175)||(42836746-42836906)
chr5 (27-173)||(40056749-40056904)
chr5 (24-173)||(23429000-23429158)
chr5 (24-173)||(35188800-35188958)
chr5 (85-173)||(39207372-39207460)
chr5 (85-173)||(3925977-3926065)
chr5 (27-173)||(39800611-39800766)
chr5 (26-173)||(33742926-33743074)
chr5 (24-73)||(2209414-2209463)
chr5 (24-157)||(42879092-42879234)
chr5 (115-163)||(26621249-26621297)
[»] scaffold0115 (1 HSPs)
scaffold0115 (27-173)||(21830-21985)
[»] scaffold0155 (1 HSPs)
scaffold0155 (24-173)||(7096-7238)
[»] chr7 (14 HSPs)
chr7 (24-173)||(7766826-7766984)
chr7 (24-173)||(23809882-23810040)
chr7 (36-169)||(30541697-30541839)
chr7 (24-175)||(38440651-38440805)
chr7 (85-173)||(5972746-5972834)
chr7 (24-173)||(25501909-25502067)
chr7 (24-173)||(11039392-11039549)
chr7 (25-173)||(33189159-33189316)
chr7 (27-170)||(27336711-27336863)
chr7 (24-84)||(2944273-2944333)
chr7 (24-173)||(22519395-22519553)
chr7 (115-171)||(1053384-1053440)
chr7 (24-62)||(5972848-5972886)
chr7 (24-72)||(36298654-36298702)
[»] scaffold0691 (1 HSPs)
scaffold0691 (85-173)||(7683-7771)
[»] scaffold0057 (1 HSPs)
scaffold0057 (32-170)||(66366-66513)
[»] scaffold0246 (1 HSPs)
scaffold0246 (85-132)||(10793-10840)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 5999457 - 5999277
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccgatatccgcgcggatatggatagagtacgaatttcatat 123  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  5999457 ataaatgttatccatggatatctgtataaacccgcagatacctcaaaatccgcggattactgatatccgcgcggatatggatagggtacggatttcatat 5999358  T
Q  124 ttatctaacggagcggacacgaatatcacactatccgcatccatggatattcctacacataggcacatcaattcatatgat 204  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5999357 ttatctaacggagcggacacggatatcacactatccgcatccatggatattcctacacataggcacaccaattcatatgat 5999277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 8576674 - 8576516
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||          |||||||||||||||||||||||||||||     
T  8576674 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatcggcggattactcgctaaatggatatccgcgcggatatggatagagtacgg 8576575  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||    
T  8576574 atttcatatttatttaacggaacggacacggatatcacactatccgcatccatggatat 8576516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 35167916 - 35168074
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||         ||||||||| |||||||| |||| |||||     
T  35167916 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccacggattacccgcgaaacggatatccgcacggatatgaatagggtacgg 35168015  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| |||||||||||| |||| ||| ||| |||||| ||||| |||||||||||||||    
T  35168016 attttatatttatctaatggagtggatacggatatcatactattcgcatccatggatat 35168074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 28582074 - 28581914
Alignment:
Q  24 ataaatgttatccatggatatctgtgta--aacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtac 112  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||| |||| || ||||||||         |||||||||||||||||| |||| |||     
T  28582074 ataaatgttatccatggatatctgtatataaacccgcggatacctctaaatatgtggattacccgctaaacggatatccgcgcggatatgaatagggtat 28581975  T
Q  113 gaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    | ||||||||||||||||||||||| |||| | |||||||||||||| |||||||||||||    
T  28581974 ggatttcatatttatctaacggagcagacatggatatcacactatccacatccatggatat 28581914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 34435003 - 34435161
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||||  || ||||||         |||| |||| ||||||| ||||| |||       
T  34435003 ataaatgttatccatggatatctgtataaaccaacggatacctcaaaatccacgaattacccgctaaacggatacccgcacggatatagatagggtagag 34435102  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||    
T  34435103 atttcatatttatctaatggagcggatacggatatcacactatccgcatccatgaatat 34435161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 32292619 - 32292743
Alignment:
Q  43 atctgtgtaaacccgcggatacctcaaaatctgcggattaccgatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggaca 142  Q
    |||||| ||||| |||||||| ||||||||| | ||||||      ||||| ||||||||||||| ||| | |||||||||||||| |||||||||||||    
T  32292619 atctgtataaacacgcggatatctcaaaatccgtggatta------tccgcacggatatggatagggtatggatttcatatttatccaacggagcggaca 32292712  T
Q  143 cgaatatcacactatccgcatccatggatat 173  Q
    || |||||| ||||||||||||||| |||||    
T  32292713 cggatatcatactatccgcatccatcgatat 32292743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 10788426 - 10788336
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcgg--acacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||  ||||| |||||||||||||||||| |||| ||||    
T  10788426 gatatccgcgcggatatggatagggtatggatttcatgtttatctaacggagcggacacacggatatcacactatccgcatacatgaatat 10788336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 7622288 - 7622130
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||| |||||||||||||| |||||||||  ||||||| |         ||||||| ||||||||||||||  ||||      
T  7622288 ataaatgttatccatgaatatctgtataaacccgcggataactcaaaatccacggattatccgctaaatggatatccacgcggatatggataaggtacag 7622189  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||  |||||| |||||||  ||||||||||||| |||||  |||||||    
T  7622188 atttcatatttattcaacggaacggacacagatatcacactatctgcatctgtggatat 7622130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 642331 - 642419
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| ||||||| ||||||||||| ||||||||||| | ||||||| ||||   | |||| ||||||||||||||| |||||||    
T  642331 gatatccgcacggatattgatagagtacggatttcatatttttttaacggaacggatgaggatattacactatccgcatccttggatat 642419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 10409219 - 10409296
Alignment:
Q  96 ggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||| ||||| |||| ||||||||| ||||||||| ||||  |||||||||||||  |||||||| ||||    
T  10409219 ggatatggatagggtacggattttatatttatccaacggagcgaacacatatatcacactatcatcatccatgaatat 10409296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 48379294 - 48379452
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||         ||||||||| ||||||||||||  |||||     
T  48379294 ataaatgttatccatggatatctgtataaacccgcggatacctaaaaatccgcggattacctgctaaattgatatccgcacggatatggatatggtacgg 48379393  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  48379394 atttcatatttatctaacggagcggacacggatttcacactatccgcatccatggatat 48379452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 31585434 - 31585592
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||         ||||||||||  ||||||||||| |||||     
T  31585434 ataaatgttatccatgaatatctgtataaacccgcggatacttcaaaatctgcggattacccgctaaacggatatccgcgttgatatggatagggtacgg 31585533  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| ||||||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  31585534 attttatatttatctaacggagcggacaaggatattacactatccgcatccatggatat 31585592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 47140712 - 47140554
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccg---------atatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||          |||||||||||||||| ||||   || |     
T  47140712 ataaatgttatccatggatatctgtacaaacccgcggatacctcaaaatccgcggattacccgctaaacgaatatccgcgcggatatagataagatatgg 47140613  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47140612 atttcatatttatccaacggagcggacacgaatatcacactatccgcatccatggatat 47140554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 29678522 - 29678680
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||         ||||||||||||||||||||||| ||| |     
T  29678522 ataaatgttatccatggatatctgtataaacccgtggatacctcaaaatccgcggattacccattaaacggatatccgcgcggatatggatagggtatgg 29678621  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||| ||||||||||||||  |||||| |||||| ||||| ||||||||    
T  29678622 atttcatatttatccaacggagcggacacatatatcatactatctgcatcaatggatat 29678680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 17562987 - 17563145
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||         ||| ||||||  ||||||||||| ||| |     
T  17562987 ataaatgttatccatgaatatctgtataaacccgcggatacttcaaaatctgcggattacccgctaaacggatgtccgcgttgatatggatagggtatgg 17563086  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| ||||||||||||| |||||||||   |||| |||||||||||||||||||||||    
T  17563087 attttatatttatctaacagagcggacaaagatattacactatccgcatccatggatat 17563145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 38264525 - 38264683
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccg---------atatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||  | |||||||||         ||||| |||||||||||||||| | |||     
T  38264525 ataaatgttatccatggatatctgtataaacccgcggatacttcaaaattcgtggattaccggctaaacggatatctgcgcggatatggatagggcacgg 38264624  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||| ||||||||| |||||||  |||||||| |||||| ||||||| ||||    
T  38264625 atttcatatttgtctaacggaacggacacatatatcacagtatccgtatccatgaatat 38264683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 25294198 - 25294286
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||  |||||||||||| ||||  |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  25294198 gatatccgcatggatatggatagggtacagatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 25294286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 36728955 - 36729104
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||| ||| | |||| |||||||  |||||||| ||||| ||||         ||||||||| ||||||| ||||| ||||||    
T  36728955 ataaatgttatccatgaatatttgtatgaacctgcggatatgtcaaaatccgcggactacccgctaaacggatatccgcacggatattgatagggtacga 36729054  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatc 164  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||    
T  36729055 atttcatatttatccaacggatcggacacggatatcacactatccgcatc 36729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 31292958 - 31293118
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||||||   |||||| |         ||||||||| | |||||||||||  | ||     
T  31292958 ataaatgttatccatggatatctgtataaatccgcggatacctaaaaatccatggattatccgctaaatggatatccgcacagatatggataggctgcgg 31293057  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatattc 175  Q
    |||||||||||||||||||||||||| |  ||||||||| ||||||||||||| |||||||    
T  31293058 atttcatatttatctaacggagcggatataaatatcacattatccgcatccatagatattc 31293118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 19884610 - 19884768
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccg---------atatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||  | ||||| ||          |||| || |||||||| ||||| | | ||    
T  19884610 ataaatgttatccatggatatctatataaacccgcggatacctcaaaattcgtggattccccgttaaatgaatattcgtgcggatatagatagggcatga 19884709  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||| || ||||||||||||||  ||||||||||||||||||||||| ||||    
T  19884710 atttcatatttgtccaacggagcggacacagatatcacactatccgcatccatgaatat 19884768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 2192002 - 2192145
Alignment:
Q  36 catggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatttcatattta 126  Q
    ||||||||||||| ||||| ||| |||||||||||||||| |||||| |         ||| | |||||||||||||||||   |   |||||||||||     
T  2192002 catggatatctgtataaactcgcagatacctcaaaatctgtggattatctgctaaatggatgttcgcgcggatatggataggacatagatttcatatttg 2192101  T
Q  127 tctaacggagcggacacgaatatcacactatccgcatccatgga 170  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||    
T  2192102 tctaatggagcggacacggatatcacattatccgcatccatgga 2192145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 25987244 - 25987165
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatc 164  Q
    |||||| | |||||||||||||   |||  |||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  25987244 gatatctgtgcggatatggataagatacatatttcatacttatctaacggagcggacacgtatatcacactatccacatc 25987165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 15378739 - 15378698
Alignment:
Q  132 cggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||| |||||| ||||||||||||||||||||| ||||||    
T  15378739 cggagcagacacggatatcacactatccgcatccacggatat 15378698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 15378819 - 15378770
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatc 73  Q
    ||||||||||||||||||||| ||| |||| |||  ||||||||||||||    
T  15378819 ataaatgttatccatggatatttgtataaatccgttgatacctcaaaatc 15378770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 17145512 - 17145565
Alignment:
Q  120 atatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||||| |||  ||||| |||||||| | ||||||||||    
T  17145512 atatttatctaacggagcggagacgggtatcatactatccgtacccatggatat 17145565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 13825832 - 13825674
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||||| || |||| ||||||||| || |||||||         ||||||||||||||||||||||| |||||     
T  13825832 ataaatgttatccatggatatctgtataaacctgcagatatctcaaaatccgcagattacccgctaaatggatatccgcgcggatatggatagggtacgg 13825733  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  13825732 atttcatatttatctaacggagcggacacatatatcacactatccgcatccatggatat 13825674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 25874911 - 25875069
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||         |||||  |||||||||||||||| |||||     
T  25874911 ataaacgttatccatggatatctgtataaacccacggatacctcaaaatccgcggattacccgctaaacggatatttgcgcggatatggatagggtacgg 25875010  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  25875011 atttcatctttatctaacggagcggacacggatatcacactatccacatccatgtatat 25875069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 4127925 - 4127766
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc----------gatatccgcgcggatatggatagagtacg 113  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||          |||||  ||| | |||||||||| || ||    
T  4127925 ataaatgttatccatggatatatgtataaacccgcggatacctcaaaatctgtggattaccccctaaatttgatatatgcgtgaatatggatagggttcg 4127826  T
Q  114 aatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
     |||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  4127825 gatttcatatttatccaacggaacggacacggatatcacactatccgcatccatggatat 4127766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 12148886 - 12148798
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||  |||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  12148886 gatatccgcatggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 12148798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 21287969 - 21287881
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||| || || |||||||||| ||||| |||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||    
T  21287969 gatatctgcacgaatatggatagggtacggatttcatatttatctaacggaggggacacagatatcacactatctgcatccatggatat 21287881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 5295044 - 5294986
Alignment:
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  5295044 atttcatatttatctaacggaggggacacggatatcacactatccgcatccatgaatat 5294986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 27926827 - 27926985
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||| ||||||||| ||||| ||||| || ||||||||||  | ||||||         |||| ||| |  ||||| ||||||||||      
T  27926827 ataaatgttatccatcgatatctgtataaactcgcgggtagctcaaaatctatgcattacccgttaaacggataaccgtgtcgatatagatagagtacat 27926926  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||||||||| |||| ||||||||  |||||||| ||||    
T  27926927 atttcatatttatctaacggagcggacacggatatgacactatctacatccatgaatat 27926985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 48251851 - 48252009
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||| ||||||||| ||| |||||| |  |||||||||||||  | ||||||||         ||||||| || |||||| ||||| ||||||    
T  48251851 ataaatgttattcatggatatatgtataaaccagtagatacctcaaaattcgtggattacctgctaaacggatatccacgtggatatcgatagggtacga 48251950  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||| |||||| |||| | | |||||||||||||| ||| |||||||||    
T  48251951 atttcatatttatccaacggaacggatatggatatcacactatccacattcatggatat 48252009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 36584250 - 36584162
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||| |||||| | |||||||||||||||| || ||||| || ||  |||||| |||||| ||||||||||||||    
T  36584250 gatatccgcgcggatatgaatagagcatgaatttcatatttatccaatggagcagatacagatatcatactatctgcatccatggatat 36584162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 21288021 - 21287983
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggat 62  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  21288021 ataaatgttatccatggatatctgtataaacccgcggat 21287983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 26187851 - 26187804
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaa 71  Q
    |||||| ||||||||| |||||||| ||||| ||||||||||||||||    
T  26187851 ataaatattatccatgaatatctgtataaactcgcggatacctcaaaa 26187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 13626501 - 13626659
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||         ||||||||| ||||||||||||| |||||     
T  13626501 ataaatgttatccatgaatatctgtataaacccgcggatatctcaaaatatgcggattaccctctaagaggatatccgcccggatatggatagggtacgg 13626600  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  13626601 atttcatatttatctaacgaaacggacacgaatatcacactatccgcatctatggatat 13626659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 5938659 - 5938501
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||| ||| ||||||||| ||||| |||||||||| ||||||||         ||||||| ||||||||||||||| ||||||    
T  5938659 ataaatgttatccatggatatttgtataaacccgcagatacttcaaaatctgtggattacccgctaaacggatatccacgcggatatggatagggtacga 5938560  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||| ||||||| |||||||||||| | |||||||||||||    
T  5938559 atttcatatttatctaacggagtggacacggatatcacactattcacatccatggatat 5938501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 5704527 - 5704399
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||         ||||||||||||||||| ||||||||||      
T  5704527 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatcattggattacccgctaaacggatatccgcgcggatatagatagagtacag 5704428  T
Q  115 atttcatatttatctaacggagcggacac 143  Q
    ||||||||||||||||| |||||||||||    
T  5704427 atttcatatttatctaatggagcggacac 5704399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 5110131 - 5109974
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||| | ||||||||         |||||||||  | ||||||||||| ||||     
T  5110131 ataaatgttatccatggatatctgtaaaaatccgcggatacctcaaaatccgtggattacccgctaaacggatatccgcatgaatatggatagaatacgg 5110032  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||| || ||||| |||| ||||||||||||||||||| |||||||||    
T  5110031 atttcatatttatctgacagagcgcacacaaatatcacactatccgcat-catggatat 5109974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 42625222 - 42625376
Alignment:
Q  27 aatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggatta-ccg--------atatccgcgcggatatggatagagtacgaatt 117  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||   |||||| |||        ||||||||  |||||||||||| ||||| |||    
T  42625222 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatgaatatccgcatggatatggatagggtacggatt 42625321  T
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||| ||| ||||||| |||||||||| |||||||||||||||||    
T  42625322 tcatatttatctaac-gagtggacacggatatcacactctccgcatccatggatat 42625376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 13807426 - 13807338
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| |||||||||||||  |||| ||||||||||| |||||||  ||||||||  |||||||||||||||| |||||||||||    
T  13807426 gatatccgcacggatatggataggatacggatttcatatttttctaacgaggcggacacagatatcacactatccgcgtccatggatat 13807338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 31576151 - 31576286
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||||||||||||  |||||| ||||||||| |||||  ||||||||||         ||||||| | ||||||||||||| |||| |    
T  31576151 ataaatgttatccatggatatctgtacaaacccacggatacctaaaaattcgcggattacccgctaaatggatatccacacggatatggatagggtacaa 31576250  T
Q  115 atttcatatttatctaacggagcggacacgaatatc 150  Q
    ||||||||||||| ||| |||| ||||||| |||||    
T  31576251 atttcatatttatataatggagtggacacggatatc 31576286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 45151526 - 45151584
Alignment:
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||    
T  45151526 atttcatatttatctaacagagcggacacggatatcacactatccgcatgcatggatat 45151584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 31604686 - 31604598
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| | ||||| ||||  |||| ||||||||||||||| |||||||| ||||| ||||||||||||||||  |||||| ||||    
T  31604686 gatatccgcacagatatagataaggtacaaatttcatatttatccaacggagcagacacaaatatcacactatccgtgtccatgaatat 31604598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 45458588 - 45458648
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc 84  Q
    ||||||||||||||||||||||||| ||||   | |||||| |||||||||| ||||||||    
T  45458588 ataaatgttatccatggatatctgtataaatttgtggatacttcaaaatctgtggattacc 45458648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 45151442 - 45151480
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggat 62  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  45151442 ataaatgttatccatagatatctgtataaacccgcggat 45151480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 41039257 - 41039099
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||| | |||||||||| |||||| ||||||||||         ||||||||| ||||||||||||  |||||     
T  41039257 ataaatgttatccatggatatctgtataaatctgcggatacctaaaaatccgcggattacccgctaaatggatatccgcacggatatggatatggtacgg 41039158  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  41039157 atttcatatttatctaacggagcggacacggatatcacattatccgcatccatggatat 41039099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 23626779 - 23626621
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||         |||||||||  ||||||| |||| ||||||    
T  23626779 ataaatgttatccatggatatatgtataaactcgcggatacctcaaaatctgtggattacctgctaaacggatatccgcatggatatgaatagtgtacga 23626680  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||  ||||||||||||| |||||||||||||  ||||||||||||||    
T  23626679 atttcatatttatccgacggagcggacacaaatatcacactatttgcatccatggatat 23626621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 38951545 - 38951387
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||| |||||||| | ||||||||||  |||||||||||  || ||||| |         ||||||||||||||||||||||||||| ||    
T  38951545 ataaatgttatccacggatatctatataaacccgcgattacctcaaaattcgcagattatccgttaaacggatatccgcgcggatatggatagagtatga 38951446  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  38951445 attttatatttatctaacggaacggacacgaatatcacactctccgcatccatggatat 38951387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 8819575 - 8819663
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||||||| | ||||||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||||    
T  8819575 gatatccgcgcggatatggatagggaacgaatttcatatttgtccaacggagtggacgcgaatatcacactatccgcatccatggatat 8819663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 51357105 - 51356948
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||||| |||| ||| |||||||  | ||||||||         |||||||| | |||||||||||| | || |    
T  51357105 ataaatgttatccatggatatctgtataaacctgcgggtac-tcaaaattcgtggattacccgctaaattgatatccgtgtggatatggatagggcacaa 51357007  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||| || ||||||||||||||  ||||||||||||||||||||||||||||    
T  51357006 atttcatatttgtccaacggagcggacacagatatcacactatccgcatccatggatat 51356948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 19841666 - 19841513
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||||||| || |||||||         ||||||||| | ||||| ||||| |||||     
T  19841666 ataaatgttatccatgaatatctgtataaatccgcggatacctcaaaatcagcagattacccgctaaacggatatccgcacagatatcgatagggtacgg 19841567  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatg 168  Q
    ||||||||||||||  || |||||||||   |||||||||||||||||||||||    
T  19841566 atttcatatttatccgacagagcggacatagatatcacactatccgcatccatg 19841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 42555243 - 42555097
Alignment:
Q  27 aatgttatccatggatatctgtgtaaaccc-gcggatacctcaaaatctgcggattaccgatatc-cgcgcggatatggatagagtacgaatttcatatt 124  Q
    ||||||||||||| |||||||| ||||||| ||||||| ||||||||||   |||||||  ||   ||||| |||||||||||||||| |||||||||||    
T  42555243 aatgttatccatgaatatctgtataaaccccgcggatatctcaaaatctatagattacctgtaaaacgcgcagatatggatagagtacaaatttcatatt 42555144  T
Q  125 tatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| ||||||||||| |   | ||||||||||||||||||||||||||    
T  42555143 tatcaaacggagcggata--tacatcacactatccgcatccatggatat 42555097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 40572168 - 40572254
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||  |||||||||||| |||  ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  40572168 gatatccgcatggatatggatagggta--aatttcacatttatctaacggagtggacacgaatatcacactatccacatccatggatat 40572254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 22278152 - 22278076
Alignment:
Q  97 gatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||| ||||| ||||| |||||||||||||| |||||| |||||||| |||||| | ||||  |||||||||||||    
T  22278152 gatattgatagggtacggatttcatatttatccaacggaacggacacggatatcataatatctacatccatggatat 22278076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 40715136 - 40715208
Alignment:
Q  101 tggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||| ||| |||||||||| ||||  |||||| | |||||||||||||||||||| |||||| |||||||    
T  40715136 tggatagggtatgaatttcatacttattcaacggatcagacacgaatatcacactatctgcatccttggatat 40715208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 36465096 - 36465167
Alignment:
Q  94 gcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatcc 165  Q
    |||||||||||||||  |   ||||||||||| || ||||||||||| || |||||||||||||||||||||    
T  36465096 gcggatatggatagaacattgatttcatatttgtccaacggagcggatacaaatatcacactatccgcatcc 36465167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 24916676 - 24916616
Alignment:
Q  113 gaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||| ||||||||||| |||| |||||||||| |||||| |||||| || |||||||||||    
T  24916676 gaatatcatatttatccaacgaagcggacacggatatcatactatctgcgtccatggatat 24916616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 55710113 - 55710059
Alignment:
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatggata 172  Q
    ||||||||||| ||||||||||||||||  |||| ||||||||  ||||||||||    
T  55710113 tcatatttatccaacggagcggacacgaggatcatactatccgtgtccatggata 55710059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 29116926 - 29116861
Alignment:
Q  64 cctcaaaatctgcggattacc-gatatccgcgcggatatggatagagtacgaatttcatatttatc 128  Q
    ||||||||||  ||||||||| ||||||||||||||||| ||||   ||| |||||||||||||||    
T  29116926 cctcaaaatccacggattacccgatatccgcgcggatattgataagatacaaatttcatatttatc 29116861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 17120487 - 17120547
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc 84  Q
    ||||||||||| ||| ||||||| | ||||| |||||||| |||||||| || ||||||||    
T  17120487 ataaatgttattcatagatatctatataaactcgcggatagctcaaaatttgtggattacc 17120547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 7987430 - 7987588
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||         ||||||||| ||||||||||||| |||||     
T  7987430 ataaatgttatccatggatatctgtataaacccgcagatacctcaaaatccgcagattacccgctaaacggatatccgcacggatatggatagggtacgg 7987529  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||| ||||||||||||||  |||||||| |||| ||||||||||||||    
T  7987530 atttcatatttatccaacggagcggacacagatatcacaatatctgcatccatggatat 7987588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 36583093 - 36583251
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||| | ||||| ||| |||||||||||||||| ||||||||         |||||||||||||||||| |||| |||||     
T  36583093 ataaatgttatccatggatatctatataaactcgctgatacctcaaaatctgtggattacccgttaaacggatatccgcgcggatatgaatagggtacgg 36583192  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||    
T  36583193 atttcatatttatctaacggaacggacacggatatcatactatacgcatccatggatat 36583251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 7968638 - 7968790
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||| ||| |||||||| ||| |||||||| ||||||||||||||| ||||||||||         ||||||||| ||||||||||||| |||||     
T  7968638 ataaatgtcatctatggatatatgtataaacccgtggatacctcaaaatccgcggattacccgctaaacggatatccgcacggatatggatagggtacgg 7968737  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccat 167  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  7968738 atttcatatttatccaacggagcggacacggatatcacactatctgcatccat 7968790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 8227502 - 8227590
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  8227502 gatatccgcatggatatggatagagtacggatttcatatttatctaacggagcggacacggatatcacactatccacatccatggatat 8227590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 11481286 - 11481199
Alignment:
Q  86 atatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||| |||||||||||||  |||||||||||||||||||||  ||||||||||| |||||||||||||||||||| ||||||||    
T  11481286 atatccgcacggatatggataggatacgaatttcatatttatctattggagcggacacaaatatcacactatccgcatctatggatat 11481199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 31005940 - 31005782
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||| || |||| | |||| |||| |||||||||||||| | |||||| |         |||||||||||| |||||||||| | |||     
T  31005940 ataaatgttatccatagagatctttataaatccgcagatacctcaaaatccgtggattatccgctaaacggatatccgcgcgaatatggatagggcacgg 31005841  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||    
T  31005840 atttcatatttgtccaacggagcggacacggatatcacactatctgcatccatggatat 31005782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 9765276 - 9765346
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacact 155  Q
    ||||||| ||||||||||||||| ||||| |||| |||||||||||||| |||||||||  ||||||||||    
T  9765276 gatatccacgcggatatggatagggtacggatttaatatttatctaacgaagcggacacatatatcacact 9765346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 6870773 - 6870849
Alignment:
Q  97 gatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||| |||||| | |||||||||||||||| |||  ||| |||||| |||| ||| |||||||||||||||||||    
T  6870773 gatatgcatagagaatgaatttcatatttatccaacatagcagacacggatattacattatccgcatccatggatat 6870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 13355726 - 13355588
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||  | ||||||||| ||||||| ||||||||||||||||  |||||||||         ||||||| | || |||| ||||| |||||     
T  13355726 ataaatgttatctttcgatatctgtataaacccacggatacctcaaaatccacggattacctgctaaacggatatccacacgaatatagatagggtacgt 13355627  T
Q  115 atttcatatttatctaacggagcggacacgaatatcaca 153  Q
    ||||||||||||||||| ||| |||| | | ||||||||    
T  13355626 atttcatatttatctaatggaacggatatggatatcaca 13355588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 1e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 42836906 - 42836746
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||| ||  ||||||| |         |||||| || ||||||||||||  ||||      
T  42836906 ataaatgttatccatgaatatctgtgtaaacccgcggatacctaaaactcctcggattatccgttaaatggatatctgcacggatatggatatggtacat 42836807  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatattc 175  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  42836806 atttcatatttatctaacggagcggacacagatatcacactatccgcatccatggatattc 42836746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 40056904 - 40056749
Alignment:
Q  27 aatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatt 117  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||   |||||| |         |||||||||  |||||||||||| |||||||||    
T  40056904 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtacgaatt 40056805  T
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  40056804 tcatatttatctaacggagtggaaacggatatcacactatccgcatccatggatat 40056749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 23429158 - 23429000
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||| |||||| | ||||| ||         ||||||||| ||||||||||||| |||||     
T  23429158 ataaatgttatccatggatatatgtataaactcgcggatacctaaaaatccgtggattgcccgctaaatggatatccgcacggatatggatagggtacgg 23429059  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||| |||||| |||| | ||||||||||||||||||||||| ||||    
T  23429058 atttcatatttatctatcggagcagacaaggatatcacactatccgcatccatgaatat 23429000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 35188800 - 35188958
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||| ||| |||||| |||||||||| ||||||   |||||| |         ||||| ||| ||||||| |||||  |||      
T  35188800 ataaatgttatccatggatatttgtataaacctgcggatacctaaaaatccatggattatccgctaaatggatattcgcacggatatagataggatacag 35188899  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35188900 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 35188958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 39207372 - 39207460
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| |||||||||| || ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  39207372 gatatccgcacggatatggaaagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcatccatggatat 39207460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 3926065 - 3925977
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||| || ||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  3926065 gatatctgcacggatatggatatggtacggatttcatatttatctaacggagcggacacaaatatcacactatccacatccatggatat 3925977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 39800611 - 39800766
Alignment:
Q  27 aatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatt 117  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||   |||||| |         |||||| ||  |||||||||||| ||||| |||    
T  39800611 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatctgcatggatatggatagggtacggatt 39800710  T
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    | ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  39800711 ttatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 39800766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 33742926 - 33743074
Alignment:
Q  26 aaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaat 116  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||  |||||||||         ||||||  | ||||||||||||| ||||| ||    
T  33742926 aaatgttatccatggatatctgtataaacccgcatatacctcaaaatccacggattacccgctaaaaggatatcgacacggatatggatagggtacggat 33743025  T
Q  117 ttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    | ||||||||| ||||||||||        |||||||||||||||||||||||||||    
T  33743026 tacatatttatgtaacggagcg--------tatcacactatccgcatccatggatat 33743074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 2209463 - 2209414
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatc 73  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  2209463 ataaatgttatccatggatatctgtataaacccgcatatacctcaaaatc 2209414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 42879092 - 42879234
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||| |||| ||| |||||| ||| ||||||||| |||| |||||||||         |||||||||  |||||||||||  ||||      
T  42879092 ataaatgttatccatgaatatatgtataaacctgcgaatacctcaacatctacggattacccgctaaacggatatccgccgggatatggatattgtacat 42879191  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactat 157  Q
    |||||||||||||| |||||||  ||||  ||||| |||||||    
T  42879192 atttcatatttatccaacggagtagacataaatattacactat 42879234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 26621297 - 26621249
Alignment:
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcat 163  Q
    ||||||||||||| || ||||| ||||||| ||||||||||||| ||||    
T  26621297 atttcatatttatttagcggagtggacacggatatcacactatctgcat 26621249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 21985 - 21830
Alignment:
Q  27 aatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatt 117  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||   |||||| |         |||||||||  |||||||||||| ||||| |||    
T  21985 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctatatggatatccgcatggatatggatagggtacggatt 21886  T
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  21885 tcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 21830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 7096 - 7238
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccgatatccgcgcggatatggatagagtacgaatttcatat 123  Q
    ||||||||||||||||||||||||| |||| ||| | |||||| |||||||||||||||||      |||  |||||| ||||| |||||||||||||||    
T  7096 ataaatgttatccatggatatctgtataaatccgtgaatacctaaaaatctgcggattacc------cgcatggatatagatagggtacgaatttcatat 7189  T
Q  124 ttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| ||||||| ||  ||||||||||||| ||||||||||||||    
T  7190 ttatctaac-gagcggatacagatatcacactatctgcatccatggatat 7238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 7766984 - 7766826
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||||||||| |||||| ||||| |||| |||| |||||||||||||||||||         ||||||| | ||||||||||||   |||      
T  7766984 ataaatgttatccatggaaatctgtataaacgcgcgaatacttcaaaatctgcggattacccgctaaacggatatccacacggatatggataagatacat 7766885  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  7766884 atttcatatttatccaacggagcggacatgaatatcacactatccgcatccatgtatat 7766826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 23809882 - 23810040
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||  |||||||||||| ||||| ||||||||||| |||||| | |||||||          ||||||| | ||||||||||||| |||||     
T  23809882 ataaatgttatttatggatatctgtataaactcgcggatacctaaaaatccgtggattactcgctaaatggatatccccacggatatggatagggtacgg 23809981  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  23809982 atttcatatttatctaacggagtggacacggatatcgcactatccgcatccatggatat 23810040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 30541697 - 30541839
Alignment:
Q  36 catggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatttcatattta 126  Q
    ||||||||||||| |||||| |||||||||||||||||  |||| |||          ||||||||||||||||||||||| ||||| |||||||||| |    
T  30541697 catggatatctgtataaacctgcggatacctcaaaatccacggagtactcgttcaatggatatccgcgcggatatggatagggtacggatttcatattaa 30541796  T
Q  127 tctaacggagcggacacgaatatcacactatccgcatccatgg 169  Q
    || ||||||||||| |||||||||| |||||||||||||||||    
T  30541797 tccaacggagcggatacgaatatcatactatccgcatccatgg 30541839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 38440651 - 38440805
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    |||||||||||| |||||||||||| |||||| || ||||||||||||||  || ||||||         ||||| ||||||||||||       |||||    
T  38440651 ataaatgttatctatggatatctgtataaacctgcagatacctcaaaatccacgaattacctgctaaatggatattcgcgcggatatga------tacga 38440744  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatattc 175  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  38440745 atttcatatttatccaacgaagcggacacgaatatcacactatccgcatccatggatattc 38440805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 5972834 - 5972746
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||| || |||||||||| ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  5972834 gatatccgcacgtatatggatagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcattcatggatat 5972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 25502067 - 25501909
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggatt---------accgatatccgcgcggatatggatagagtacga 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  | |||||         || |||||| ||||| ||||| |||| |||  |    
T  25502067 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaattcgtggattactagctaaacggatatctgcgcgtatatgaatagggtataa 25501968  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||||||||||||||||| ||| | |||||||||| ||  ||| |||||||||    
T  25501967 atttcatatttatctaacggagcgaacatggatatcacactttcaacattcatggatat 25501909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 11039392 - 11039549
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattaccg--------atatccgcgcggatatggatagagtacgaa 115  Q
    |||||||| |||||||||||||||| ||||||||| |||||||||||||  | ||||  |||        ||| |||| ||||||||||||  |||| ||    
T  11039392 ataaatgtcatccatggatatctgtataaacccgcagatacctcaaaattcgtggatacccgctgaacggatacccgcacggatatggatatggtacaaa 11039491  T
Q  116 tttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||| ||||||| ||||||| |||||| | |||| ||||||||||||||    
T  11039492 tttcatatttatccaacggagtggacacggatatcatattatctgcatccatggatat 11039549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 33189316 - 33189159
Alignment:
Q  25 taaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaa 115  Q
    |||||||||||||||||||||||| ||||| || | ||||||||||||||  ||||||||         |||||||  |||||||| ||||| | ||  |    
T  33189316 taaatgttatccatggatatctgtataaactcgtgaatacctcaaaatctatggattacccgctaaacggatatccatgcggatattgatagggcacata 33189217  T
Q  116 tttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    ||||||||||||| ||||||| ||||||| |||||| |||||| |||||||| |||||    
T  33189216 tttcatatttatcaaacggagtggacacggatatcaaactatctgcatccatagatat 33189159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 27336863 - 27336711
Alignment:
Q  27 aatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatt 117  Q
    ||||||||||||||||||| || |||| ||| |||||||||||||||   |||||| |         |||||||||  |||||||||||| ||  | |||    
T  27336863 aatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtctggatt 27336764  T
Q  118 tcatatttatctaacggagcggacacgaatatcacactatccgcatccatgga 170  Q
    |||||||||||||||| || ||||||| ||||||||||||| |||||||||||    
T  27336763 tcatatttatctaacgaagtggacacggatatcacactatctgcatccatgga 27336711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 2944273 - 2944333
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc 84  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||||||    
T  2944273 ataaatattatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacc 2944333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 22519395 - 22519553
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacga 114  Q
    ||||||| ||||||||||||| ||| ||||||||  ||||||| |||||  | ||||||||         ||||||| |||||||| |||||| |||||     
T  22519395 ataaatgatatccatggatatttgtataaacccgatgataccttaaaattcgtggattacctgctaaatggatatccacgcggatacggatagggtacgg 22519494  T
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||| ||||| ||| |||| ||||  ||||| |||||||||| ||||||||||||    
T  22519495 atttcataattatccaaccgagcagacaaaaatattacactatccgtatccatggatat 22519553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 1053384 - 1053440
Alignment:
Q  115 atttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggat 171  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||    
T  1053384 atttcatatttgtctaatggagcggacacggatatcacactatctgcatccatggat 1053440  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 5972886 - 5972848
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggat 62  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  5972886 ataaatgttatccatggatatttgtataaacccgcggat 5972848  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 36298702 - 36298654
Alignment:
Q  24 ataaatgttatccatggatatctgtgtaaacccgcggatacctcaaaat 72  Q
    |||| |||||||||||||||||||| ||||  | |||||||||||||||    
T  36298702 ataagtgttatccatggatatctgtataaattcacggatacctcaaaat 36298654  T

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Target: scaffold0691 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 7771 - 7683
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatat 173  Q
    |||||||||  |||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  7771 gatatccgcatggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 7683  T

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Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 66513 - 66366
Alignment:
Q  32 tatccatggatatctgtgtaaacccgcggatacctcaaaatctgcggattacc---------gatatccgcgcggatatggatagagtacgaatttcata 122  Q
    ||||||||||||||||| ||| ||||||||||||||||||||   | ||||||          |||| ||| | ||||||||||| |  |  ||||||||    
T  66513 tatccatggatatctgtataatcccgcggatacctcaaaatccatgaattacccgctaaataaatattcgcacagatatggatagggctcagatttcata 66414  T
Q  123 tttatctaacggagcggacacgaatatcacactatccgcatccatgga 170  Q
    ||| || || ||||| ||||| ||||||||||||||||||||||||||    
T  66413 tttgtccaatggagctgacacaaatatcacactatccgcatccatgga 66366  T

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Target: scaffold0246 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 10793 - 10840
Alignment:
Q  85 gatatccgcgcggatatggatagagtacgaatttcatatttatctaac 132  Q
    |||||||||| ||||||| |||| ||||| ||||||||||||||||||    
T  10793 gatatccgcgtggatatgaatagggtacggatttcatatttatctaac 10840  T

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