View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_high_5 (Length: 560)
Name: NF18717_high_5
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Complemental strand, 46357737 - 46357204
Alignment:
| Q |
17 |
aattatttctttaaaagagatagcatggatctgtctcactagttgacatgtttatttccatatttaggaatcattatttgtaaatggaaattaaattctg |
116 |
Q |
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| T |
46357737 |
aattatttctttaaaagagatagcatggatctgtctcactagttgacatgtttatttccatatttaggaatcattatttgtaaatggaaattaaattctg |
46357638 |
T |
|
| Q |
117 |
tttggcatcaaatcttttaaactacttctgtgaactcaataaaaaatgtatttaacgatgctcatattcacctatatatctacatcnnnnnnncttcaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46357637 |
tttggcatcaaatcttttaaactacttctgtgaactcaataaaaaatgtatttaacgatgctcatattcacctatatatctacatctttttttcttcaga |
46357538 |
T |
|
| Q |
217 |
aaaataatattcattcaaatgataaaattttgaatgatcatgtgttgcgacactcccatccacattttaaatcaatattagtaactaataaaagtcaaga |
316 |
Q |
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| T |
46357537 |
aaaataatatttattcaaatgataaaattttgaatgatcatgtgttgcgacactcccatccacattttaaatcaatattagtaactaat-aaagtcaaga |
46357439 |
T |
|
| Q |
317 |
ataagctaggatacacacaaacagtccaaaaaccaaggagaaattaacgaatcaaaaccttaatcctaaaaacccaacaaacttctttcaaatacgatca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46357438 |
ataagctaggatacacacaaacagtccaaaaaccaaggagaaattaacaaatcaaaaccttaatcctaaaaacccaacaaacttctttcaaatacgatca |
46357339 |
T |
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| Q |
417 |
atgggcaactgctataaaaccatctacctttgnnnnnnntaattgatattcattcatataacgtgaccaatacaactacatgttgagaagtcttttgtga |
516 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46357338 |
atgggcaactgctataaaaccatctacc-ttgaaaaaaaaaattgatattcattcatataacgtgaccaatataactacatgttgagaagtcttttgtga |
46357240 |
T |
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| Q |
517 |
cgccgcagacctcttaccccaagacaagttcatctc |
552 |
Q |
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||||| ||||||||||||||||||||| |||||||| |
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| T |
46357239 |
cgccgtagacctcttaccccaagacaaattcatctc |
46357204 |
T |
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