View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_high_7 (Length: 511)
Name: NF18717_high_7
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 493
Target Start/End: Complemental strand, 28784873 - 28784397
Alignment:
| Q |
17 |
agcagagaaagcgttgatgtgcgttgcagcacacgcacacatgcggccatcaatatcagaagtagtgaaggaaattcaagacgcgattggtattgaaaga |
116 |
Q |
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| T |
28784873 |
agcagagaaagcgttgatgtgcgttgcagcacacgcacacatgcggccatcaatatcagaagtagtgaaggaaattcaagacgcaattggtattgaaaga |
28784774 |
T |
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| Q |
117 |
gagagggaaagtagcatttcagatgagatgatgacaagaaattcagtacactcttccatcaacatgggttctatggatcttgctgcgaccgagaattacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784773 |
gagagggaaagtagcatttcagatgagatgatgacaagaaattcagtacactcttccatcaacatgggttctatggatcttgctgcgaccgagaattacc |
28784674 |
T |
|
| Q |
217 |
tagctattgatgattccattgctagacccactgcacgatagtgtgaccgtaatgtaatgccacaattttgagctaccttgtgcgactcttgctttccatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784673 |
tagctattgatgattccattgctagacccactgcacgatagtgtgaccgtaatgtaatgccacaattttgagctaccttgtgcgactcttgctttccatt |
28784574 |
T |
|
| Q |
317 |
gtttagagtgtcacaaatttgacttgacaaaacccccatttttggtttattacttacttagcaagtaaccaattttatatgctcttttagactctggact |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784573 |
gtttagagtgtcacaaatttgacttgacaaaacccccatttttggtttattacttacttagcaagtaaccaattttatatgctcttttagactctggact |
28784474 |
T |
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| Q |
417 |
cctaactggtaaccatcaaacatacaatatgtcaatatgatctgaattcccatacgtatctaacagaatactcttct |
493 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28784473 |
cctaactagtaactatcaaacatacaatatgtcaatatgatctgaattcccatacgtatctaacagaatactcttct |
28784397 |
T |
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