View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18717_high_9 (Length: 475)
Name: NF18717_high_9
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 33050789 - 33050640
Alignment:
| Q |
17 |
cttagataatgagatttgctaaaacagtggatcattgttacaaataagtgaacatttgtattatatttggcctcatttagaagatttgattagtctacat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
33050789 |
cttagataatgagatttgctaaaacagtggatcattgttacaaataagtgaacatttgtattatatttggccttattgagaagattagattagtctacat |
33050690 |
T |
|
| Q |
117 |
gttaaacttcagacatatgcttgtcttttttaaatattttaatcattggc |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050689 |
gttaaacttcagacatatgcttgtcttttttaaatattttaatcattggc |
33050640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 286 - 430
Target Start/End: Complemental strand, 33050501 - 33050361
Alignment:
| Q |
286 |
tttgttaatgaaaagactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaaatataataccattacgacgaacgagacctatcacagt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
33050501 |
tttgttaatgaaaagactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaatt----taccattacgacgaacgagacctgtcacagt |
33050406 |
T |
|
| Q |
386 |
attcatcagtgtctagaaaattaataaaatcatgtttataacaac |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050405 |
attcatcagtgtctagaaaattaataaaatcatgtttataacaac |
33050361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 300 - 398
Target Start/End: Complemental strand, 33031935 - 33031841
Alignment:
| Q |
300 |
gactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaaatataataccattacgacgaacgagacctatcacagtattcatcagtgtc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33031935 |
gactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaatt----taccattacgacgaacgagacctatcacagtattcatcaatgtc |
33031841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 33032074 - 33031989
Alignment:
| Q |
81 |
atttggcctcatttagaagatttgattagtctacatgttaaacttcagacatatgcttgtcttttttaaatattttaatcattggc |
166 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| |
|
|
| T |
33032074 |
atttggcctcattgagaagattagattagtctacatgttaaacttcagacatatgcttgtctattataaatatttaaatcattggc |
33031989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 295 - 384
Target Start/End: Complemental strand, 38903301 - 38903215
Alignment:
| Q |
295 |
gaaaagactcagaatatgggtggtgatataacagaatggtcggcaaggtaaaaaatataatacc-attacgacgaacgagacctatcacag |
384 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
38903301 |
gaaaggactcagaatatgggtggtgatataacaggatggtcggcaaggtcgaaa----aagaccaattacgacgaacgagacctatcacag |
38903215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 43521285 - 43521243
Alignment:
| Q |
300 |
gactcagaatatgggtggtgatataacagaatggtcggcaagg |
342 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43521285 |
gactcagaatatgggtggtgatataacaggatggtcggcaagg |
43521243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University