View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_12 (Length: 461)
Name: NF18717_low_12
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 10772592 - 10772395
Alignment:
| Q |
10 |
attatacttcctgaaatctccaaggaatacgttgttagaataaaacaaaa--tcagagtttttaaaatttttggaatttcgcaatcatattttttacaaa |
107 |
Q |
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| T |
10772592 |
attatacttcctgaaatccccaaggaatacgttgttagaataaaaaaaaaaatcagagtttttaaaatttctgaaatattgcaatcatattttttacaaa |
10772493 |
T |
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| Q |
108 |
tttccagagcataaatcattgaaactttattaaac-aaaatcctaagaatatgtttggatgactaaatttaaataggtaacacaatttttcagggaat |
204 |
Q |
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| T |
10772492 |
tttcccgagcataaatcattgaaactttattaaacaaaaatcttaagaatatgtttggatgaataaatttaaataggtaacacaatttttcagggaat |
10772395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 252 - 443
Target Start/End: Complemental strand, 10772027 - 10771818
Alignment:
| Q |
252 |
atttttaacaatttgttgattatattagtcgacaatgataaataatagttatattctcccttgttatattattagggatatcaaatcctcatgtaatttg |
351 |
Q |
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| T |
10772027 |
atttttaacaatttgttgattatattagtcgacaataataaataatagttatattctcccttgttatattattagggatatcaaatccacatgtaatttg |
10771928 |
T |
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| Q |
352 |
t-ta-----tatta---------ctaagaaactg---aatttgtcagtttcggtcagaataagaactactattgcagtaaatgtgataatcggtgctctt |
433 |
Q |
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| T |
10771927 |
tgtacaacttcttaaacggtaatttaagaaactgatcaatttgtcagtttcggtcaaaataagaactactgttgcagtaaatgtgataattggtgctctt |
10771828 |
T |
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| Q |
434 |
tggaacatta |
443 |
Q |
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| T |
10771827 |
tggaacatta |
10771818 |
T |
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