View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18717_low_16 (Length: 433)

Name: NF18717_low_16
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18717_low_16
NF18717_low_16
[»] chr4 (7 HSPs)
chr4 (1-433)||(4124214-4124646)
chr4 (354-433)||(4335071-4335151)
chr4 (336-433)||(4320894-4320991)
chr4 (358-433)||(4344377-4344452)
chr4 (358-433)||(4360808-4360883)
chr4 (18-118)||(4360050-4360150)
chr4 (357-420)||(4133711-4133774)
[»] chr6 (22 HSPs)
chr6 (351-433)||(5396674-5396756)
chr6 (358-433)||(5176470-5176545)
chr6 (358-433)||(5278297-5278372)
chr6 (351-430)||(5354892-5354971)
chr6 (351-429)||(5284668-5284746)
chr6 (351-425)||(5182210-5182284)
chr6 (367-430)||(5433775-5433838)
chr6 (357-415)||(5257627-5257685)
chr6 (351-433)||(5690434-5690516)
chr6 (367-430)||(5128695-5128758)
chr6 (351-426)||(5344585-5344660)
chr6 (367-433)||(5147171-5147237)
chr6 (365-430)||(5096446-5096511)
chr6 (365-427)||(5102895-5102957)
chr6 (365-426)||(5066976-5067037)
chr6 (382-427)||(5074189-5074234)
chr6 (367-430)||(5446897-5446960)
chr6 (365-427)||(5157909-5157971)
chr6 (362-428)||(5447322-5447388)
chr6 (356-421)||(5383055-5383120)
chr6 (366-427)||(5425649-5425710)
chr6 (367-427)||(5370311-5370371)
[»] chr7 (1 HSPs)
chr7 (351-433)||(36214104-36214186)
[»] chr5 (1 HSPs)
chr5 (351-430)||(8877333-8877412)
[»] scaffold0294 (1 HSPs)
scaffold0294 (356-422)||(9186-9252)
[»] chr3 (4 HSPs)
chr3 (354-429)||(47987131-47987206)
chr3 (354-429)||(47996418-47996493)
chr3 (354-429)||(48005705-48005780)
chr3 (354-429)||(48014990-48015065)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 4124646 - 4124214
Alignment:
Q  1 agttgaaaactatgaatagttcgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatacaagtacaaacaaaattcaca 100  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4124646 agttgaaaactatgaataatttgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatataagtacaaacaaaattcaca 4124547  T
Q  101 catcagtccataaatcaacacagtaaataaaagaaaccagaggaatttcaaacctatctattatgctgaattttaaaattcacagcagaatgctggcacc 200  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4124546 taacagtccataaatcaacacagtaaataaaagaaaccagaggaatttcaaacctatctattatgctgaattttaaaattcacagcagaatgctggcacc 4124447  T
Q  201 cgaatattttgagcaaaaagtaatactaaaccaacatatgtgagtattnnnnnnntggctatgcacccacacaaatattttattaccactctcaaggttg 300  Q
    ||||||||||||||||||||||||||||||| ||| |||||  |||||       ||||||||||| |||||||||||||||||||||||||||||||||    
T  4124446 cgaatattttgagcaaaaagtaatactaaactaacgtatgttggtattaaaaaaatggctatgcactcacacaaatattttattaccactctcaaggttg 4124347  T
Q  301 gtgacacgtcgtacgtgcttgtacttatctttttatgctttatccgcaagttctctataatatttctgttcttgcagagaatggagcagctgaaaattct 400  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4124346 gcgacacgtcgtacgtgcttgtacttctctttttatgctttatccgcaagttctctataatatttctgttcttgcagagaatggagcagctgaaaattct 4124247  T
Q  401 caatcttagtcattctcattatctgacacagac 433  Q
    |||||||||||||||||||||||||||||||||    
T  4124246 caatcttagtcattctcattatctgacacagac 4124214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 354 - 433
Target Start/End: Original strand, 4335071 - 4335151
Alignment:
Q  354 tctataatatttctgtt-cttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagac 433  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  4335071 tctataatatttctgtttcttgcagaggatggagcagttgaaaattctcaatcttagtcattctcattatctaacacagac 4335151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 336 - 433
Target Start/End: Complemental strand, 4320991 - 4320894
Alignment:
Q  336 tgctttatccgcaagttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagac 433  Q
    ||||||||||| || ||||||||||||||| | || |||||||| |||||||||||||| ||||| |||||||||||||||||| || ||||||||||    
T  4320991 tgctttatccgtaacttctctataatatttttatttttgcagaggatggagcagctgaagattctaaatcttagtcattctcatcatttgacacagac 4320894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 358 - 433
Target Start/End: Original strand, 4344377 - 4344452
Alignment:
Q  358 taatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagac 433  Q
    ||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  4344377 taatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctgacacagac 4344452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 433
Target Start/End: Original strand, 4360808 - 4360883
Alignment:
Q  358 taatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagac 433  Q
    |||||||| |||| || ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4360808 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagac 4360883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 4360050 - 4360150
Alignment:
Q  18 agttcgattataatacaaaagatccatcatagccctaactatgaatttagttacaatgtatacaagtacaaacaaaattcacacatcagtccataaatca 117  Q
    |||| ||||||| |||| ||||||||||||| ||||||| ||||||||  ||||||||||||  |||| ||||||||| |||| |  ||| |||||||||    
T  4360050 agtttgattatattacataagatccatcataaccctaacaatgaatttgtttacaatgtataatagtataaacaaaatccacatagtagtacataaatca 4360149  T
Q  118 a 118  Q
    |    
T  4360150 a 4360150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Complemental strand, 4133774 - 4133711
Alignment:
Q  357 ataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcatt 420  Q
    |||| |||| |||||||||||||  ||||| | || ||| ||||||||||||||||||||||||    
T  4133774 ataacatttttgttcttgcagaggctggagaatctaaaatttctcaatcttagtcattctcatt 4133711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 5396674 - 5396756
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagac 433  Q
    |||| |||||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  5396674 ttctttataatatttatgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattatttgacacagac 5396756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 358 - 433
Target Start/End: Original strand, 5176470 - 5176545
Alignment:
Q  358 taatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagac 433  Q
    |||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  5176470 taatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagac 5176545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 358 - 433
Target Start/End: Original strand, 5278297 - 5278372
Alignment:
Q  358 taatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagac 433  Q
    |||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  5278297 taatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagac 5278372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 5354971 - 5354892
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacaca 430  Q
    |||||| |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||    
T  5354971 ttctctttaatatgtatgttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctgacaca 5354892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 5284746 - 5284668
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacac 429  Q
    ||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  5284746 ttctcaataatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatctcacac 5284668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 5182284 - 5182210
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctg 425  Q
    |||| ||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||| ||||    
T  5182284 ttctttataacatttctgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattttctg 5182210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 5433775 - 5433838
Alignment:
Q  367 tgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacaca 430  Q
    |||||||||||||||||||| ||||||||||||| || |||||||||| |||||||||||||||    
T  5433775 tgttcttgcagagaatggagaagctgaaaattcttaaccttagtcattgtcattatctgacaca 5433838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 5257685 - 5257627
Alignment:
Q  357 ataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattc 415  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  5257685 ataatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattc 5257627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 5690516 - 5690434
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagac 433  Q
    |||||| |||||||| | |||||| |||  |||||| |||| |||||||||||||||||||| ||||||||||||||||||||    
T  5690516 ttctctttaatatttatattcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcattatctgacacagac 5690434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 430
Target Start/End: Complemental strand, 5128758 - 5128695
Alignment:
Q  367 tgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacaca 430  Q
    ||||||||||||  |||||| |||||||||||||||||| |||||||||||||| |||||||||    
T  5128758 tgttcttgcagatgatggagaagctgaaaattctcaatcatagtcattctcattgtctgacaca 5128695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 5344585 - 5344660
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctga 426  Q
    ||||||| || |||| ||||||| ||||  |||||| |||||||||||||||||||||||||||||||||| ||||    
T  5344585 ttctctacaacatttatgttcttacagatgatggagaagctgaaaattctcaatcttagtcattctcattacctga 5344660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 433
Target Start/End: Complemental strand, 5147237 - 5147171
Alignment:
Q  367 tgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagac 433  Q
    ||||||||||||| |||||| |||| ||||||||||| |||||||| ||||||||| ||||||||||    
T  5147237 tgttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattatttgacacagac 5147171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 430
Target Start/End: Original strand, 5096446 - 5096511
Alignment:
Q  365 tctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacaca 430  Q
    ||||||||||||||| |||||  | ||||||||||| ||||||||||||||||||| |||||||||    
T  5096446 tctgttcttgcagaggatggaaaaactgaaaattctaaatcttagtcattctcattgtctgacaca 5096511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 5102957 - 5102895
Alignment:
Q  365 tctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgac 427  Q
    |||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||| ||||||    
T  5102957 tctgttcttgcagaggttggaaaagctgaaaattctaaatcttagtcattctcattgtctgac 5102895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 5067037 - 5066976
Alignment:
Q  365 tctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctga 426  Q
    ||||||||||||||| |||||  ||||||||||||| |||||||| |||||||||| |||||    
T  5067037 tctgttcttgcagaggatggaaaagctgaaaattctaaatcttagccattctcattgtctga 5066976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 427
Target Start/End: Complemental strand, 5074234 - 5074189
Alignment:
Q  382 tggagcagctgaaaattctcaatcttagtcattctcattatctgac 427  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||    
T  5074234 tggagaagctgaaaatactcaatcttagtcattctcattatctgac 5074189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 5446897 - 5446960
Alignment:
Q  367 tgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacaca 430  Q
    ||||||||||||| |||||| |||| ||||||||||||||||| ||||| || ||||| |||||    
T  5446897 tgttcttgcagaggatggagaagctaaaaattctcaatcttagccattcgcactatctcacaca 5446960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 5157971 - 5157909
Alignment:
Q  365 tctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgac 427  Q
    ||||||||||||||  |||||  |||| |||||||| ||||||||||||||||||| ||||||    
T  5157971 tctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgac 5157909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 5447322 - 5447388
Alignment:
Q  362 atttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgaca 428  Q
    |||| ||||||||||||| |||||  | ||||||| ||||||||||||||||||||||  |||||||    
T  5447322 atttttgttcttgcagaggatggaaaatctgaaaaatctcaatcttagtcattctcatcgtctgaca 5447388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 5383055 - 5383120
Alignment:
Q  356 tataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcatta 421  Q
    |||||||||| ||||||||||||| ||||||   |||||||| || || |||||||||||||||||    
T  5383055 tataatatttatgttcttgcagaggatggagatactgaaaatcctaaaccttagtcattctcatta 5383120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 5425649 - 5425710
Alignment:
Q  366 ctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgac 427  Q
    ||||| |||||| | |||||  ||||||||||||| ||||||||||||||||||| ||||||    
T  5425649 ctgtttttgcagtggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgac 5425710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 5370311 - 5370371
Alignment:
Q  367 tgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgac 427  Q
    ||||||||||||  |||||  |||| |||||||| ||||||||||||||||||| ||||||    
T  5370311 tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgac 5370371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 36214186 - 36214104
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagac 433  Q
    |||| ||||| ||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  36214186 ttctttataacatttctgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcattctcattatctgacaaagac 36214104  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 8877333 - 8877412
Alignment:
Q  351 ttctctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacaca 430  Q
    |||||||| | |||| ||||||||||||| |||||| |||| ||||||||||||||||| || |||||| ||||||||||    
T  8877333 ttctctatcaaatttatgttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctgacaca 8877412  T

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Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 9252 - 9186
Alignment:
Q  356 tataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattat 422  Q
    |||||||||| || ||||||||||  ||| | |||||||||||||||||||||||||||||||||||    
T  9252 tataatatttatggtcttgcagaggctggcgaagctgaaaattctcaatcttagtcattctcattat 9186  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 429
Target Start/End: Complemental strand, 47987206 - 47987131
Alignment:
Q  354 tctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacac 429  Q
    ||||||| |||  ||||||||||||  |||||  |||| |||||||||||||||||||||||||||||||| ||||    
T  47987206 tctataaaattcatgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacac 47987131  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 429
Target Start/End: Complemental strand, 47996493 - 47996418
Alignment:
Q  354 tctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacac 429  Q
    ||||||| |||  ||||||||||||  |||||  |||| |||||||||||||||||||||||||||||||| ||||    
T  47996493 tctataaaattcatgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacac 47996418  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 429
Target Start/End: Complemental strand, 48005780 - 48005705
Alignment:
Q  354 tctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacac 429  Q
    ||||||| |||  ||||||||||||  |||||  |||| |||||||||||||||||||||||||||||||| ||||    
T  48005780 tctataaaattcatgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacac 48005705  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 429
Target Start/End: Complemental strand, 48015065 - 48014990
Alignment:
Q  354 tctataatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacac 429  Q
    ||||||| |||  ||||||||||||  |||||  |||| |||||||||||||||||||||||||||||||| ||||    
T  48015065 tctataaaattcatgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacac 48014990  T

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