View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18717_low_18 (Length: 412)
Name: NF18717_low_18
Description: NF18717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18717_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 39396627 - 39396247
Alignment:
| Q |
16 |
ataactttgtagatgttacatcaacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataac |
115 |
Q |
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| T |
39396627 |
ataactttgtagatgttacatcaacaattttaagcaatggttgtttgtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataac |
39396528 |
T |
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| Q |
116 |
tttactgaatcaagatttgtccaaaatacggcactcgcagcatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttca |
215 |
Q |
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| T |
39396527 |
ttcactgaatcaagatgtgtccaaaatacggcacttgcaacatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttca |
39396428 |
T |
|
| Q |
216 |
atagctgctgcattgttgtgtaagaaactctcaaagaagattgataagtactccatgcccttatatttgggtagtacacgtgagattatctttgttcaat |
315 |
Q |
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| T |
39396427 |
atagctgctgcatttttgtgtaagaaactctcaaagaagattgataagtactccatg-ccttatatttgggtagtacacgtgagattatctttgttcaat |
39396329 |
T |
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| Q |
316 |
ctttcaatgtaccaaatatgaatctcattgttgtgtggtactttttcgtatcataatctatttttcctcttcattcaaatgt |
397 |
Q |
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| T |
39396328 |
ctttcaatgtaccagatatgaatctcattgtcatgtggtactttttcgtatcataatctatttttcctcttcattcaaatgt |
39396247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
203 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
262 |
Q |
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| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
248 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
322 |
Q |
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| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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